AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03137 ATGGCTTCAAGTTCCGAAATAGGGCTTGCAGCTACCATAAACATCCTCACCGCATTTGCATTTCTGGTTGCATTTGCCATACTTCGAATCCAGCCTTTCAACGATAGAGTTTACTTCCCAAAATGGTACCTAAGGGGACTAAGGAACAATCCACTTCAATCAGGCGCATTTGTGCAGAAGTTTGTAAACTTGGATTTCAGATCATACTTGAAGTTCCTCAATTGGATGCCTGCTGCATTACGCATGCCAGAGCCTGAGCTAATCGATCACGCTGGATTAGACTCTGTTATCTACTTGAGAATTTACTTAACCGGACTCAAGATCTTTGTACCGATTGCATGCCTAGCTTTCACTGTTATGGTTCCCGTCAATTTTACTAATAAAACTTTGGAGGAATCTAAGTTAACATATAGTGACATAGACAAGCTTTCAATATCCAACATTCCCACTGGATCAAACAGGTTCTTTACACATTTAGTGATGGCATACGCCTTTACCTTTTGGACATGTTATATTTTAAAAAGAGAATACGAGAAAGTTGCAACAATGAGGTTGCATTTTATCTCATCAGAACATCGAAGACCCGATCAATTCACTGTATTGGTCAGAAATGTCCCCCCAGACCCTGACGAATCGGTCAACGAACTAGTGGAACACTTTTTTCTAGTCAACCATCCCGATAACTATCTATCTCATCAGGTTGTTTACAATGCGAACGTGCTCTCTGATTTGGTAAACGAGAAGAAAACGAAGCAGAATTGGCTTGACTATTATCAACTCAAATATAACAGAAATAACCAGTCAAAAAGACCATCAGTAAAGACTGGTTATCTTGGTTTATGGGGAAAGAAGGTGGATGCTATTGAGTATTATGAATCGGAGGTCGAGAAACTATCGAAAAAAATATGTAAAGAGAGGGAAAAGGTTACGAAAAGCTCGAAGCATGTCATGCCGGCGGCGTTTGTTTCGTTTAAAACACGATGGGGAGCTGCGGTCTGTGCACAAACCGAACAATCGAGGAATCCGACTATCTGGTTAACAGAATGGGCTCCAGAACCTCGTGATGTTTACTGGGATAATCTCGCGATTCCGTTCGTTTCACTCACGATTCGGAGGCTCGTAATTGCTGTCGCGTTTTTCTTCCTTACGTTCTTCTTCATGATTCCGATCGCATTCGTACAGTCGCTGGCGAACATCGATGGTATCGTGAAAGCCGCTCCGTTTTTACAGGGCGTTCTCGAAGTGGAATTTGTTAAATCGTTTATCCAAGGTGTTCTTCCTGGAATCGCGTTGAAGATCTTCCTGATTTTTCTACCTTCGATCCTCATGATGATGTCGAAGTTTGAAGGATTCACCTCGATTTCAGCTCTCGAGAGAAGATCCGCTACTCGATATTACATCTTCCAGTTCATCAACGTCTTCCTCGGCAGCATAATCACCGGAACCGCATTTCAACAGCTAAACACCTTCATCCACCAGTCTGCAAACACAATCCCGATCACAATCGGTGCATCTATACCAATGAAGGCGACCTTCTTCATAACATACATCATGGTAGACGGATGGGCTGGAGTCGCAGGCGAGATTCTCAGGTTAAAACCGCTAATATTCTACCACTTGAAGAATTTCTTCTTAGTGAAAACCGAGAAAGACAGAGAAGAAGCCATGAATCCCGGTAGCTTACCTTTCAGCACCGGCGAACCTCAAATCCAGCTTTACTTCTTACTCGGACTTGTTTATGCCGTCGTCACCCCCATTCTTCTTCCTTTTATCGTCGTATTCTTCGGGTTGGCTTACGTCGTATACCGCCATCAGATTATAAACGTATACAATCAACAATACGAAAGTGCGGGAGCTTTCTGGCCGGACGTTCATGGTCGGATTATAACCGCACTGATTGTTTCACAGCTTCTCTTAATGGGCCTACTGAGCACAAAAGAAGCGGCCCAATCAACCCCATTACTCATCGTACTCCCTATCCTCACAATCTGGTTTCATAGATTCTGTAAAGGAAGATTCGAACCCGCGTTCGTTAGGTACCCTTTACAGGAGGCTATGATGAAAGATACGTTGGAAAGGGCAAGGGAGCCGGGCTTGAATGTGAAAGGATACTTACAAGACGCGTATGTACACCCGGTGTTTAGTAACTGGGATGGGAGTGATGATGGAGTGAGTGATGATGATGAGTGGCCGAAAGAGCCGGCTCTGGTCCCCACAAAGCGTGAGTCGCGAGTCAACACGCCAGTCAGGAGTCAGAGGAGTGAGTCATCGCGGACACTGTTGTGTGTCTTGGATGAAAGATCGTGTCCGTGA 2313 44.31 MASSSEIGLAATINILTAFAFLVAFAILRIQPFNDRVYFPKWYLRGLRNNPLQSGAFVQKFVNLDFRSYLKFLNWMPAALRMPEPELIDHAGLDSVIYLRIYLTGLKIFVPIACLAFTVMVPVNFTNKTLEESKLTYSDIDKLSISNIPTGSNRFFTHLVMAYAFTFWTCYILKREYEKVATMRLHFISSEHRRPDQFTVLVRNVPPDPDESVNELVEHFFLVNHPDNYLSHQVVYNANVLSDLVNEKKTKQNWLDYYQLKYNRNNQSKRPSVKTGYLGLWGKKVDAIEYYESEVEKLSKKICKEREKVTKSSKHVMPAAFVSFKTRWGAAVCAQTEQSRNPTIWLTEWAPEPRDVYWDNLAIPFVSLTIRRLVIAVAFFFLTFFFMIPIAFVQSLANIDGIVKAAPFLQGVLEVEFVKSFIQGVLPGIALKIFLIFLPSILMMMSKFEGFTSISALERRSATRYYIFQFINVFLGSIITGTAFQQLNTFIHQSANTIPITIGASIPMKATFFITYIMVDGWAGVAGEILRLKPLIFYHLKNFFLVKTEKDREEAMNPGSLPFSTGEPQIQLYFLLGLVYAVVTPILLPFIVVFFGLAYVVYRHQIINVYNQQYESAGAFWPDVHGRIITALIVSQLLLMGLLSTKEAAQSTPLLIVLPILTIWFHRFCKGRFEPAFVRYPLQEAMMKDTLERAREPGLNVKGYLQDAYVHPVFSNWDGSDDGVSDDDEWPKEPALVPTKRESRVNTPVRSQRSESSRTLLCVLDERSCP 770
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03137 770 PANTHER PROBABLE MEMBRANE PROTEIN DUF221-RELATED 8 718 IPR045122 GO:0005227(InterPro)|GO:0005227(PANTHER)|GO:0005886(PANTHER)
Tamo4g03137 770 Pfam Late exocytosis, associated with Golgi transport 9 176 IPR032880 -
Tamo4g03137 770 Pfam Calcium-dependent channel, 7TM region, putative phosphate 371 643 IPR003864 GO:0016020(InterPro)
Tamo4g03137 770 Pfam Cytosolic domain of 10TM putative phosphate transporter 197 360 IPR027815 -
Tamo4g03137 770 MobiDBLite consensus disorder prediction 721 757 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03137 K21989 calcium permeable stress-gated cation channel
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:60451899 Tamo5g01064 Tamo-Chr5:14698070 dispersed
Tamo Tamo-Chr1:140830 Tamo4g03137 Tamo-Chr4:60451899 transposed
Tamo Tamo-Chr7:13495349 Tamo4g03137 Tamo-Chr4:60451899 transposed
Tamo Tamo-Chr7:58769009 Tamo4g03137 Tamo-Chr4:60451899 transposed
Tamo Tamo-Chr4:60451899 Tamo7g00446 Tamo-Chr7:5848453 wgd