AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03151 ATGGGTACCATATTCAAAGCAAGCTTCCTCTTATCATCCCTGTTGTGTCTTCTCTCACCTTCTGCATATTCAGCTTCTAATGGTGGATTGGTTAAAGTTAATCTTAAAAAGAGGAAAATCAACCAATTAAACAAACATGGTGGACATTCTTCCTTAAATGAAGAAAATCCTGGAAGAAATTCTGGTCTTTATGGTAACTTTAGGGATTCAGAAAGTGACATAATTTCTCTGAAAAACTACATGGATGCTCAGTATTATGGTGAGATTGGTATTGGCACTCCACCTCAAAAGTTCACTGTCATTTTTGATACTGGAAGCTCTAACCTTTGGGTGCCTTCTACCAAGTGCTATTTCTCAGTTGCTTGCCTTTTCCACTCAAAATATAAGTCTAGCCAATCAAGTACATACAAGAAGAATGGGAAATCTGCTGCAATTCGATATGGAACTGGTGCTATCTCTGGCTTCTTTAGCCAAGATTCTATAAAACTTGGTGATTTTGTTATCAAGGAACAGGATTTCATAGAGGCAACCAAAGAGCCAGGTGTCACTTTTGTGGCGGCAAAGTTTGATGGTATACTTGGCCTTGGGTTTCAAGAAATCTCTGTTGGTGATGCTCTTCCTGTTTGGTACAACATGGTTGACCAAGGTCTTGTTCATGAACCGGTTTTTTCATTTTGGCTTAATCGCAATACATCGAATGAGGAAGGGGGTGAACTTGTGTTTGGTGGGGTTGATACAAATCATTTCAAAGGCAAACACACTTATGTCCCTGTTACTCAAAAGGGTTACTGGCAGTTTGAAATGAATGATTTCTTCATTGGTAACGACACAACTGGATTTTGCGACGATGGTTGTGCAGCAATTGCCGATTCTGGAACCTCTTTGATGGCTGGTCCAACGGCTGTTGTTACCCAAATCAATGAAGCCATTGGTGCTGCGGGAGTTATGAGCGAAGAATGCAAGACATTGGTCGATAAATATGGAAAAACTATACTTGACATGCTCATATCTAAGACAGAACCTAAAAAAATATGCGGTGAAATGAACATGTGTGGCAAGGAGGGTTCTCGTGCTACCAGTATGATAATCGAGAGCGTGGTTGATAAAACTAATGATAAATCTTCGGGTTTAGACGACGAAATGTGTACTTTCTGTGAGATGGCAGTTTATTGGATACAAAACGAGCTCAAGAAAAATAAGAGTGAGGATTCCATAATTAATTATGCTGACAAGCTATGTGAAAAAATGCCAAGTCCAGGAGGAGAATCTACAGTTGACTGTAACAAACTTTCTTCCATGCCCAATGTTGCTTTTACTATTGGCGGTAAAACATTTGAACTCTCCCCTCAAGAGTATATTTTAAAAATTGGCGAGGGAGCGAAAGCACAATGTATCAGTGGATTTAGTGCTCTCGATGTGCCACCTCCTCGCGGACCTCTATGGATTTTGGGAGATATTTTTATGGGTAAATACCATACAGTGTTTGATTATGGTAACTTACAAGTCGGGTTTGCTGAAGCAGCTTGA 1527 39.95 MGTIFKASFLLSSLLCLLSPSAYSASNGGLVKVNLKKRKINQLNKHGGHSSLNEENPGRNSGLYGNFRDSESDIISLKNYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSTKCYFSVACLFHSKYKSSQSSTYKKNGKSAAIRYGTGAISGFFSQDSIKLGDFVIKEQDFIEATKEPGVTFVAAKFDGILGLGFQEISVGDALPVWYNMVDQGLVHEPVFSFWLNRNTSNEEGGELVFGGVDTNHFKGKHTYVPVTQKGYWQFEMNDFFIGNDTTGFCDDGCAAIADSGTSLMAGPTAVVTQINEAIGAAGVMSEECKTLVDKYGKTILDMLISKTEPKKICGEMNMCGKEGSRATSMIIESVVDKTNDKSSGLDDEMCTFCEMAVYWIQNELKKNKSEDSIINYADKLCEKMPSPGGESTVDCNKLSSMPNVAFTIGGKTFELSPQEYILKIGEGAKAQCISGFSALDVPPPRGPLWILGDIFMGKYHTVFDYGNLQVGFAEAA 508
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03151 508 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Tamo4g03151 508 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Tamo4g03151 508 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Tamo4g03151 508 PRINTS Pepsin (A1) aspartic protease family signature 481 496 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Tamo4g03151 508 SUPERFAMILY Acid proteases 11 507 IPR021109 -
Tamo4g03151 508 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 25 507 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Tamo4g03151 508 SMART sapb-4 279 351 IPR008139 -
Tamo4g03151 508 SMART sapb-4 380 464 IPR008139 -
Tamo4g03151 508 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Tamo4g03151 508 MobiDBLite consensus disorder prediction 45 63 - -
Tamo4g03151 508 Gene3D Acid Proteases 244 508 IPR021109 -
Tamo4g03151 508 FunFam Lysosomal aspartic protease 71 313 - -
Tamo4g03151 508 Gene3D Acid Proteases 31 243 IPR021109 -
Tamo4g03151 508 ProSiteProfiles Peptidase family A1 domain profile. 85 505 IPR033121 -
Tamo4g03151 508 Pfam Saposin-like type B, region 1 381 417 IPR007856 GO:0006629(InterPro)
Tamo4g03151 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Tamo4g03151 508 FunFam Vacuolar aspartic proteinase 401 507 - -
Tamo4g03151 508 SUPERFAMILY Saposin 316 417 IPR011001 -
Tamo4g03151 508 Pfam Eukaryotic aspartyl protease 84 507 IPR033121 -
Tamo4g03151 508 CDD phytepsin 75 506 IPR033869 GO:0004190(InterPro)
Tamo4g03151 508 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Tamo4g03151 508 Gene3D - 315 417 - -
Tamo4g03151 508 Pfam Saposin-like type B, region 2 319 351 IPR008138 -
Tamo4g03151 508 MobiDBLite consensus disorder prediction 44 63 - -
Tamo4g03151 508 ProSiteProfiles Saposin B type domain profile. 378 419 IPR008139 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03151 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
166339 Tamo2g00097 Tamo4g03151
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:89665300 Tamo4g03151 Tamo-Chr4:60803814 dispersed
Tamo Tamo-Chr3:89685680 Tamo4g03151 Tamo-Chr4:60803814 dispersed
Tamo Tamo-Chr4:60803814 Tamo4g03981 Tamo-Chr4:76644996 dispersed
Tamo Tamo-Chr3:88958709 Tamo4g03151 Tamo-Chr4:60803814 transposed
Tamo Tamo-Chr2:2240382 Tamo4g03151 Tamo-Chr4:60803814 wgd