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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03155 ATGATTTACCTGTTCTTCGCGATTTTATTCGTCGAAATGTTGACGATTCTGTTACTTTTGTTCAAAACCCCACTCCGAAAGCTATTGATTATTGGGTTAGATCGTGCGAAACGAGGAACAGCTCCACTGGTTGTCAAATCCGTCGCCGCTACCTTCTTCGTTATCATGCTGTACAACGTTTACAGCGTAATGGAAATCAAGAGGCGCCCCGCCGACGTCAATAATCCCACCGATCAAATCATTCTCGCTTACCACATGCTCGAAGCTGCTCTCATGGGATTCTCCCTATTTCTCACCCTAATGATCGACCGTCTGCACCACTACATACGCGAGCTCCGAATGCTTAGAAAAACAATGGAAACCACAAAGAAACAAAGCCGGGCAGCTGAAGAGTTTAAGAACAAAGGGGCGGATGAAGTGAGACAACTGAATGAAGAAATGATAAAAATGAGAAACGAAATGAAGAAATTGGAGACAAAGTATTCAGCCATGGAGAAGGAAGTGAAGTCGGCTGAAGCTAATTCTCTTGCTCTTAAGCACCAATCGGAAGGGTTTCTTCTAGAATATGATCGATTGTTGGCCGAAAATGAGAACCTTAAAGAGCAACTTCGTGCCATTGATGAAAGCTTGTCGCATTCTAATGGAAAGAAGGATACGTGA 660 43.64 MIYLFFAILFVEMLTILLLLFKTPLRKLLIIGLDRAKRGTAPLVVKSVAATFFVIMLYNVYSVMEIKRRPADVNNPTDQIILAYHMLEAALMGFSLFLTLMIDRLHHYIRELRMLRKTMETTKKQSRAAEEFKNKGADEVRQLNEEMIKMRNEMKKLETKYSAMEKEVKSAEANSLALKHQSEGFLLEYDRLLAENENLKEQLRAIDESLSHSNGKKDT 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03155 219 FunFam B-cell receptor-associated protein 29 136 199 - -
Tamo4g03155 219 Coils Coil 133 209 - -
Tamo4g03155 219 PANTHER BCR-ASSOCIATED PROTEIN, BAP 1 200 IPR008417 GO:0005783(InterPro)|GO:0005789(PANTHER)|GO:0006886(InterPro)|GO:0006888(PANTHER)|GO:0016020(InterPro)|GO:0070973(PANTHER)
Tamo4g03155 219 Gene3D - 136 199 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03155 K14009 B-cell receptor-associated protein 31
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Event-related genes

Select Gene_1 Gene_2 Event_name
166033 Tamo1g04389 Tamo4g03155
166341 Tamo2g00105 Tamo4g03155
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr1:105742008 Tamo4g03155 Tamo-Chr4:60879469 dispersed
Tamo Tamo-Chr4:60879469 Tamo5g00876 Tamo-Chr5:12761340 dispersed
Tamo Tamo-Chr2:25525129 Tamo4g03155 Tamo-Chr4:60879469 transposed
Tamo Tamo-Chr2:25847386 Tamo4g03155 Tamo-Chr4:60879469 transposed
Tamo Tamo-Chr2:2348862 Tamo4g03155 Tamo-Chr4:60879469 wgd
Tamo Tamo-Chr4:60879469 Tamo7g00466 Tamo-Chr7:6162425 wgd