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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03241 ATGGCCGCCATCTTAGCTCGCAAGTCGATCTCCGCTCTTCGCAATCGACAGCTTGCCCATAACATTGGAGCAATTTCTGGTGCTCGCTCATTTGCAACCAAACACTCATTTTCAACTGATAAAGATGATGAAGAAAGAGAGAAGCTTGCAATAGAAATGTCAAAAGACTGGAATTCTGTGTTTGAAAGGAGCATTAATACCTTATTTCTAACTGAACTGGTTCGAGGTCTCTCTCTGACACTCAAATACTTCTTTGAGCCAAAAGTTACTATCAATTATCCATTTGAGAAAGGTCCATTAAGCCCCCGTTTTCGTGGAGAACATGCACTCAGACGTTACCCAACTGGAGAGGAACGCTGTATCGCCTGTAAACTTTGTGAAGCTATATGCCCTGCTCAAGCTATTACCATAGAAGCAGAGGAGAGAGAAGATGGCAGTCGAAGAACCACAAGGTATGATATTGATATGACAAAATGTATTTACTGTGGATTCTGCCAAGAAGCATGCCCTGTTGATGCCATTGTTGAGGGGCCCAACTTTGAGTTTGCTACTGAAACTCATGAGGAACTTCTGTATGATAAGGAGAAGCTTCTAGAAAATGGGGACAGGTGGGAGACTGAAATTGCTGAGAATCTTAGATCCGAAAGCCTTTATCGATAA 660 42.58 MAAILARKSISALRNRQLAHNIGAISGARSFATKHSFSTDKDDEEREKLAIEMSKDWNSVFERSINTLFLTELVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03241 219 Hamap NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 67 203 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Tamo4g03241 219 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 111 140 IPR017896 -
Tamo4g03241 219 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 120 131 IPR017900 -
Tamo4g03241 219 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 150 179 IPR017896 -
Tamo4g03241 219 PANTHER NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL 53 219 IPR010226 GO:0003954(PANTHER)|GO:0005747(PANTHER)|GO:0006120(PANTHER)|GO:0009060(PANTHER)|GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0032981(PANTHER)|GO:0045272(PANTHER)|GO:0051539(InterPro)
Tamo4g03241 219 Gene3D - 93 218 - -
Tamo4g03241 219 NCBIfam NADH-quinone oxidoreductase, chain I 76 197 IPR010226 GO:0016020(InterPro)|GO:0016651(InterPro)|GO:0051539(InterPro)
Tamo4g03241 219 SUPERFAMILY 4Fe-4S ferredoxins 93 203 - -
Tamo4g03241 219 FunFam NADH-quinone oxidoreductase subunit I 1 93 216 - -
Tamo4g03241 219 Pfam 4Fe-4S dicluster domain 119 173 IPR017896 -
Tamo4g03241 219 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 159 170 IPR017900 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03241 K03941 NADH dehydrogenase (ubiquinone) Fe-S protein 8 [EC:7.1.1.2]
Tamo4g03241 K00338 NADH-quinone oxidoreductase subunit I [EC:7.1.1.2]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:3627334 Tamo4g03241 Tamo-Chr4:62618487 wgd