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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03277 ATGTCGATCCTAGGTGCGAATATCCCCAGCGAGGTTGGTCTGCGATTGCTTCTTTGCCCACTTGGATCCAACATTGTCCTGAAAACAGCATGCTGTTCTGTAGGAGTTATAATACCAGTTTACTCTACATTTAAAGCAATTGAGACAAATAATACAACTGATCAACAAAAGTGGCTCTTATATTGGGCAGCATATGGGAGTTTTAGCATAGCAGAAGCATTTGCAGACAAAATAATATCATGGTTTCCACTTTACCATCACATGAAATTTGCTTTTCTTGTTTGGCTTCAACTTCCCACTACCAATGGTGCTAAGCATATTTATATGAATCATTTACGTCCTTTCCTTTTAAGGCATCAAGCTAACCTCGATCAAATTGTGGGAATCTTGTACAACGAAACCGGTAAATTTGTTAGTGCTCACGAAGGAGAATTCCGGTTCATAAAGGCAATTGTGATGAAGATTCTGATATCAGCAAAGCATATTATCAATGATAGTAGTCAACCGGTCCCACCACCAGAGGGAAGGGCAATTACGGGATTAAGTGAAGAAATAACTAGCTCTGATGATGAAAATGGTGATGAGGGTTATGTAACTGTGCCTGCAAATCAACTAAATGTTTAA 624 39.1 MSILGANIPSEVGLRLLLCPLGSNIVLKTACCSVGVIIPVYSTFKAIETNNTTDQQKWLLYWAAYGSFSIAEAFADKIISWFPLYHHMKFAFLVWLQLPTTNGAKHIYMNHLRPFLLRHQANLDQIVGILYNETGKFVSAHEGEFRFIKAIVMKILISAKHIINDSSQPVPPPEGRAITGLSEEITSSDDENGDEGYVTVPANQLNV 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03277 207 PANTHER HVA22-LIKE PROTEINS 35 129 IPR004345 -
Tamo4g03277 207 MobiDBLite consensus disorder prediction 166 198 - -
Tamo4g03277 207 Pfam TB2-DP1, HVA22 family 39 115 IPR004345 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03277 K17279 receptor expression-enhancing protein 5/6
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:3721856 Tamo4g03277 Tamo-Chr4:63468214 dispersed
Tamo Tamo-Chr4:18290332 Tamo4g03277 Tamo-Chr4:63468214 dispersed
Tamo Tamo-Chr4:63468214 Tamo8g01561 Tamo-Chr8:20402306 transposed