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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03349 ATGTCATCTTGTTCACCTTCAAAATACATCTCAACCTCCGAAGAATATCCTCTCCATTTCCATGGTTGGTTGCGAATCCACAAAGATGGCCAATGTGGAAGATTCATTGGGAATGATATCATTCCCGCTGGAATTGATCCCTTAACCAGTCTTCATTCCAAAGATGTCGTTATTTCACATCAATCCAAAGTTTTCATAAGACTTTACATTCCCAAAACCATAATCCCTAGCCGAAAACTCCCAACTCTGATTTACTATCATGGCGGCGGTTTCTTGACTGAATCCGCCGCTTCCTCCACCTACCACCTCACACTTAACTTGATCACGATGGAATCCAACGTGATTATGGTGTCTGTAACCTATAGATTAGCCCCAGAATATCTTATACTGGTTGCATACGAGGATTCTTGGGAGGCAATTAAGTGGGTGGCCAACCAAGATAATGGAAATGGTCCAGATTCATGGTTATACTGTTGGGTTTTCATATACACTTTAACATACAAAGAACGCATAATCAAGCAGCGGAAGCATCAAATAATGTTCTAA 546 41.03 MSSCSPSKYISTSEEYPLHFHGWLRIHKDGQCGRFIGNDIIPAGIDPLTSLHSKDVVISHQSKVFIRLYIPKTIIPSRKLPTLIYYHGGGFLTESAASSTYHLTLNLITMESNVIMVSVTYRLAPEYLILVAYEDSWEAIKWVANQDNGNGPDSWLYCWVFIYTLTYKERIIKQRKHQIMF 181
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03349 181 PANTHER ARYLACETAMIDE DEACETYLASE 22 146 IPR050466 -
Tamo4g03349 181 SUPERFAMILY alpha-beta-Hydrolases 11 153 IPR029058 -
Tamo4g03349 181 Gene3D alpha-beta hydrolase 12 157 IPR029058 -
Tamo4g03349 181 Pfam alpha-beta hydrolase fold 83 147 IPR013094 GO:0016787(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03349 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166081 Tamo1g04596 Tamo4g03349
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:64909345 Tamo5g03288 Tamo-Chr5:77030316 dispersed
Tamo Tamo-Chr4:64887212 Tamo4g03349 Tamo-Chr4:64909345 proximal
Tamo Tamo-Chr4:64909345 Tamo4g03351 Tamo-Chr4:64946064 proximal
Tamo Tamo-Chr2:4255639 Tamo4g03349 Tamo-Chr4:64909345 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g00022 . 25 362 Carbohydrate Esterase gene family AT5G47500 74.852 0.0 531.0
Tamo1g00050 . 232 567 Carbohydrate Esterase gene family AT3G05610 55.06 2.62e-135 410.0
Tamo1g00156 . 44 118 Carbohydrate Esterase gene family AT3G16970 29.87 5.66e-06 41.6
Tamo1g00157 . 42 125 Carbohydrate Esterase gene family AT3G16970 30.233 4.58e-08 47.4
Tamo1g00159 . 45 118 Carbohydrate Esterase gene family AT3G16970 31.579 5.01e-06 42.0
Tamo1g00343 . 13 314 Carbohydrate Esterase gene family AT1G19190 40.26 5.16e-75 231.0
Tamo1g01057 . 69 313 Carbohydrate Esterase gene family AT5G36210 64.516 2.30e-109 330.0
Tamo1g01105 . 23 255 Carbohydrate Esterase gene family AT1G68620 37.247 3.96e-51 171.0
Tamo1g02084 . 146 276 Carbohydrate Esterase gene family AT2G19150 51.145 2.50e-41 139.0
Tamo1g02169 . 42 98 Carbohydrate Esterase gene family AT3G16970 31.579 2.02e-06 43.1
Tamo1g02860 . 130 390 Carbohydrate Esterase gene family AT1G05310 73.18 2.02e-148 419.0
Tamo1g03107 . 30 118 Carbohydrate Esterase gene family AT3G16970 30.108 3.64e-08 47.8
Tamo1g03276 . 30 118 Carbohydrate Esterase gene family AT3G16970 32.258 5.32e-11 55.5
Tamo1g03277 . 30 118 Carbohydrate Esterase gene family AT3G16970 31.183 2.35e-11 55.8
Tamo1g03778 . 61 357 Carbohydrate Esterase gene family AT5G47500 49.664 8.62e-103 306.0
Tamo1g03988 . 55 581 Carbohydrate Esterase gene family AT1G53830 41.558 2.42e-129 390.0
Tamo1g03995 . 26 523 Carbohydrate Esterase gene family AT4G33220 60.516 0.0 635.0
Tamo1g04048 . 37 592 Carbohydrate Esterase gene family AT3G14310 61.319 0.0 688.0
Tamo1g04049 . 134 592 Carbohydrate Esterase gene family AT3G14310 65.577 0.0 613.0
Tamo1g04522 . 60 357 Carbohydrate Esterase gene family AT5G47500 43.144 2.93e-85 260.0
Tamo1g04595 . 3 321 Carbohydrate Esterase gene family AT3G48690 45.938 7.41e-88 264.0
Tamo1g04596 ACH 12 212 Carbohydrate Esterase gene family AT3G48700 51.244 9.05e-69 213.0
Tamo1g04989 . 18 571 Carbohydrate Esterase gene family AT4G02330 59.785 0.0 684.0
Tamo1g05045 ACH 1 341 Carbohydrate Esterase gene family AT3G63010 74.493 0.0 542.0
Tamo1g05161 . 83 606 Carbohydrate Esterase gene family AT4G33230 38.361 3.03e-118 359.0
Tamo2g00203 ACH 4 325 Carbohydrate Esterase gene family AT3G48700 43.168 1.41e-82 251.0
Tamo2g01299 . 160 350 Carbohydrate Esterase gene family AT1G53840 44.162 1.70e-40 141.0
Tamo2g01305 . 26 140 Carbohydrate Esterase gene family AT3G16970 29.06 6.51e-11 54.7
Tamo2g03656 . 45 548 Carbohydrate Esterase gene family AT5G09760 65.743 0.0 689.0
Tamo2g03726 . 46 118 Carbohydrate Esterase gene family AT3G16970 30.667 8.37e-07 43.9
Tamo2g03728 . 46 135 Carbohydrate Esterase gene family AT3G16970 26.804 2.48e-06 41.6
Tamo2g04296 ACH 41 422 Carbohydrate Esterase gene family AT3G02410 61.619 2.07e-170 481.0
Tamo2g05568 . 32 359 Carbohydrate Esterase gene family AT5G61570 52.507 3.74e-107 316.0
Tamo2g05616 ACH 58 210 Carbohydrate Esterase gene family AT3G05610 31.288 3.78e-17 77.4
Tamo2g05617 ACH 59 217 Carbohydrate Esterase gene family AT3G14310 26.415 2.01e-17 77.4
Tamo2g05618 ACH 59 216 Carbohydrate Esterase gene family AT3G14310 28.75 3.26e-19 82.8
Tamo2g05622 . 11 511 Carbohydrate Esterase gene family AT2G45220 62.279 0.0 669.0
Tamo2g05624 . 79 196 Carbohydrate Esterase gene family AT3G47400 33.613 2.44e-14 66.6
Tamo2g05625 . 2 222 Carbohydrate Esterase gene family AT2G45220 29.333 1.81e-24 98.6
Tamo2g05626 . 261 369 Carbohydrate Esterase gene family AT3G60730 54.867 2.90e-38 132.0
Tamo2g05698 . 8 260 Carbohydrate Esterase gene family AT5G23870 62.745 3.18e-115 335.0
Tamo2g05775 . 1 597 Carbohydrate Esterase gene family AT3G49220 65.794 0.0 809.0
Tamo2g05776 . 495 709 Carbohydrate Esterase gene family AT5G36210 23.111 3.44e-08 55.1
Tamo3g00059 . 1 446 Carbohydrate Esterase gene family AT5G14310 68.387 0.0 633.0
Tamo3g00262 . 59 352 Carbohydrate Esterase gene family AT5G47500 37.542 2.29e-65 208.0
Tamo3g01147 . 31 83 Carbohydrate Esterase gene family AT3G48690 45.283 2.53e-07 46.2
Tamo3g01400 . 14 118 Carbohydrate Esterase gene family AT3G16970 23.478 4.21e-07 45.1
Tamo3g02566 . 262 346 Carbohydrate Esterase gene family AT1G53840 57.955 3.75e-27 102.0
Tamo3g02965 . 1 581 Carbohydrate Esterase gene family AT1G53840 54.685 0.0 634.0
Tamo3g02967 . 13 592 Carbohydrate Esterase gene family AT3G14310 66.438 0.0 759.0
Tamo3g02970 . 13 588 Carbohydrate Esterase gene family AT3G14310 62.931 0.0 709.0
Tamo3g02977 . 1 592 Carbohydrate Esterase gene family AT3G14310 61.881 0.0 716.0
Tamo3g02980 . 13 592 Carbohydrate Esterase gene family AT3G14310 65.365 0.0 741.0
Tamo3g04483 . 242 561 Carbohydrate Esterase gene family AT3G10710 67.391 1.14e-165 472.0
Tamo3g04978 ACH 68 226 Carbohydrate Esterase gene family AT5G53370 32.143 2.79e-18 80.5
Tamo4g00056 . 34 518 Carbohydrate Esterase gene family AT4G02320 53.144 0.0 525.0
Tamo4g00058 . 11 571 Carbohydrate Esterase gene family AT4G02330 58.97 0.0 682.0
Tamo4g00070 . 52 199 Carbohydrate Esterase gene family AT4G15980 29.801 5.07e-17 76.6
Tamo4g00120 ACH 33 343 Carbohydrate Esterase gene family AT3G63010 74.921 3.53e-178 495.0
Tamo4g00335 . 262 346 Carbohydrate Esterase gene family AT1G53840 59.091 2.60e-28 106.0
Tamo4g01514 . 29 342 Carbohydrate Esterase gene family AT5G16080 34.161 1.19e-54 180.0
Tamo4g02519 . 38 554 Carbohydrate Esterase gene family AT1G23200 52.852 0.0 525.0
Tamo4g03347 . 12 282 Carbohydrate Esterase gene family AT3G48690 38.007 4.87e-59 189.0
Tamo4g03349 ACH 4 148 Carbohydrate Esterase gene family AT1G49660 42.069 2.56e-33 119.0
Tamo4g03350 . 216 308 Carbohydrate Esterase gene family AT1G19190 41.053 3.61e-15 67.4
Tamo4g03351 ACH 12 320 Carbohydrate Esterase gene family AT3G48690 47.097 9.36e-92 275.0
Tamo4g03353 . 1 325 Carbohydrate Esterase gene family AT3G48700 44.207 2.22e-83 253.0
Tamo4g03354 . 1 326 Carbohydrate Esterase gene family AT3G48700 43.465 3.43e-79 243.0
Tamo4g03764 . 8 543 Carbohydrate Esterase gene family AT3G05620 64.457 0.0 707.0
Tamo4g03768 . 17 570 Carbohydrate Esterase gene family AT3G05610 47.687 0.0 572.0
Tamo4g03819 . 17 570 Carbohydrate Esterase gene family AT3G05610 47.687 0.0 572.0
Tamo4g03828 . 8 543 Carbohydrate Esterase gene family AT3G05620 64.457 0.0 706.0
Tamo4g03905 . 1 403 Carbohydrate Esterase gene family AT5G26670 66.748 0.0 572.0
Tamo5g00728 . 2 106 Carbohydrate Esterase gene family AT2G41530 78.095 1.92e-56 175.0
Tamo5g00775 . 58 209 Carbohydrate Esterase gene family AT3G05610 26.623 7.18e-15 70.1
Tamo5g01125 . 33 518 Carbohydrate Esterase gene family AT4G02320 54.082 0.0 543.0
Tamo5g02246 . 41 205 Carbohydrate Esterase gene family AT1G25141 25.543 3.49e-08 52.0
Tamo5g02362 . 331 546 Carbohydrate Esterase gene family AT5G09760 68.056 4.18e-114 335.0
Tamo5g03059 . 262 346 Carbohydrate Esterase gene family AT1G53840 60.227 6.64e-29 107.0
Tamo5g03288 . 4 321 Carbohydrate Esterase gene family AT3G48690 41.693 3.96e-79 241.0
Tamo5g03424 . 52 214 Carbohydrate Esterase gene family AT3G14310 28.402 8.18e-17 76.3
Tamo5g03426 ACH 72 228 Carbohydrate Esterase gene family AT5G53370 27.545 1.30e-13 67.0
Tamo5g03432 . 334 442 Carbohydrate Esterase gene family AT1G23200 66.972 1.90e-50 166.0
Tamo5g03605 . 1 476 Carbohydrate Esterase gene family AT1G26120 54.065 1.21e-176 503.0
Tamo5g03759 . 27 505 Carbohydrate Esterase gene family AT3G49220 61.245 0.0 593.0
Tamo5g03867 ACH 38 218 Carbohydrate Esterase gene family AT3G14310 31.522 2.08e-19 83.6
Tamo5g03868 ACH 51 218 Carbohydrate Esterase gene family AT1G53830 35.503 1.50e-25 101.0
Tamo5g03869 ACH 69 216 Carbohydrate Esterase gene family AT1G53830 33.557 3.16e-21 90.1
Tamo5g03871 . 32 419 Carbohydrate Esterase gene family AT5G51500 53.061 5.43e-136 399.0
Tamo5g03887 . 32 361 Carbohydrate Esterase gene family AT5G61570 50.729 5.98e-103 306.0
Tamo5g03919 . 3 359 Carbohydrate Esterase gene family AT1G69940 50.278 1.78e-133 384.0
Tamo6g00039 ACH 59 213 Carbohydrate Esterase gene family AT3G14310 27.097 6.99e-19 81.3
Tamo6g00041 ACH 59 213 Carbohydrate Esterase gene family AT3G14310 29.299 1.01e-16 75.1
Tamo6g00443 . 3 375 Carbohydrate Esterase gene family AT4G19420 48.294 2.30e-143 411.0
Tamo6g00448 . 6 375 Carbohydrate Esterase gene family AT4G19420 50.938 6.90e-142 407.0
Tamo6g00451 . 256 519 Carbohydrate Esterase gene family AT3G60730 54.545 9.88e-106 314.0
Tamo6g00453 . 91 511 Carbohydrate Esterase gene family AT2G45220 47.816 5.69e-132 387.0
Tamo6g00485 . 10 566 Carbohydrate Esterase gene family AT5G49180 45.893 3.00e-179 516.0
Tamo6g00661 . 28 118 Carbohydrate Esterase gene family AT3G16970 34.375 1.45e-06 43.5
Tamo6g00683 . 1 446 Carbohydrate Esterase gene family AT5G14310 62.054 0.0 538.0
Tamo6g02092 ACH 31 369 Carbohydrate Esterase gene family AT3G02410 70.0 0.0 506.0
Tamo6g02216 . 59 362 Carbohydrate Esterase gene family AT5G47500 38.05 2.59e-71 223.0
Tamo6g03675 . 171 262 Carbohydrate Esterase gene family AT2G45220 62.626 1.87e-32 115.0
Tamo6g03679 . 16 511 Carbohydrate Esterase gene family AT2G45220 59.921 0.0 613.0
Tamo6g03681 ACH 62 231 Carbohydrate Esterase gene family AT1G53830 28.571 5.06e-16 73.2
Tamo7g00169 . 36 294 Carbohydrate Esterase gene family AT1G68620 36.496 3.50e-41 144.0
Tamo7g00173 . 36 306 Carbohydrate Esterase gene family AT1G68620 32.979 7.45e-50 167.0
Tamo7g00208 ACH 79 224 Carbohydrate Esterase gene family AT5G53370 27.564 3.46e-09 53.9
Tamo7g00210 ACH 34 200 Carbohydrate Esterase gene family AT3G05620 23.563 5.94e-08 50.4
Tamo7g00215 . 11 511 Carbohydrate Esterase gene family AT2G45220 65.891 0.0 700.0
Tamo7g00948 . 262 346 Carbohydrate Esterase gene family AT1G53840 56.818 6.12e-27 102.0
Tamo7g01935 . 5 327 Carbohydrate Esterase gene family AT3G48700 39.755 3.61e-81 248.0
Tamo7g02689 . 7 389 Carbohydrate Esterase gene family AT4G19420 63.377 0.0 546.0
Tamo7g02692 . 6 389 Carbohydrate Esterase gene family AT4G19420 61.299 0.0 528.0
Tamo7g03149 . 84 216 Carbohydrate Esterase gene family AT1G53830 31.852 7.35e-14 66.6
Tamo7g03150 ACH 50 213 Carbohydrate Esterase gene family AT3G14310 28.313 6.69e-17 76.6
Tamo7g03151 ACH 52 235 Carbohydrate Esterase gene family AT1G53830 30.457 1.62e-13 66.6
Tamo7g03153 . 56 218 Carbohydrate Esterase gene family AT1G53830 27.273 1.38e-10 57.0
Tamo7g03840 . 160 346 Carbohydrate Esterase gene family AT1G53840 43.158 4.64e-38 134.0
Tamo7g04020 . 2 247 Carbohydrate Esterase gene family AT1G53840 36.328 7.81e-42 148.0
Tamo8g00262 . 328 554 Carbohydrate Esterase gene family AT1G23200 55.462 2.10e-87 269.0
Tamo8g00494 . 4 325 Carbohydrate Esterase gene family AT3G48700 45.679 9.24e-94 280.0
Tamo8g01058 . 53 592 Carbohydrate Esterase gene family AT3G14310 59.259 0.0 619.0
Tamo8g01060 . 53 329 Carbohydrate Esterase gene family AT3G14310 45.196 5.02e-67 217.0
Tamo8g01061 . 58 588 Carbohydrate Esterase gene family AT3G14310 54.887 0.0 567.0
Tamo8g01134 . 58 357 Carbohydrate Esterase gene family AT5G47500 38.816 2.76e-78 243.0
Tamo8g01382 . 91 393 Carbohydrate Esterase gene family AT1G05310 55.116 2.10e-126 369.0
Tamo8g01392 . 97 389 Carbohydrate Esterase gene family AT1G05310 52.218 9.52e-111 328.0
Tamo8g02986 . 4 328 Carbohydrate Esterase gene family AT3G48700 48.615 1.09e-99 295.0
Tamo8g02990 . 4 278 Carbohydrate Esterase gene family AT3G48700 46.909 2.98e-83 251.0