AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03356 ATGGAGGTTTCAAATTTGCATGGAGGCATGGTACGGCGGAGTAGAGATACAGATGTCACGAGCTCCGGCGCCGGTAAAAGAAGACGACTTGATTCTGAAGACCAGAAGAAAGCTTTTCACCTTCAATGTCAGTCTCAAAGTGACCTGAACGTGAATTTCCATGAGAATGTTATTTTGACGGCGGTGTCGGGTGTTTCTGATCATGTTTCGTCGTTTTTGTGCTCTATAAATGACGATTTGAGATCAGATCTGAAGGCTGAAAGCGTTTCCGAAACCAGACTCTTCACGTCCAGTAGCGACGATTTAAGTAGGGAGACATCTACATCAAGTGTGGTTTCCCTGGAATCAGAAGAATTAATGGAGTCGTTATCCACATCAACTCCAAAGAGGAAGAAGTCAGTAGCGGCAAACGAGGCTACTTCCCGTCGTAAACCATCACCACCGGAAAAGTCTCCATCTCCGGCGGAGCTCGAAGAATTCTTCTCGGAAGCGGAAAAGTACGAACAGAAACGATTTGCAGAAAAGTACAATTATGATATCGTGAGAGACGTTCCAATGGAAGGAAGGTACCAATGGTTCCGATTACATCAATAA 594 44.95 MEVSNLHGGMVRRSRDTDVTSSGAGKRRRLDSEDQKKAFHLQCQSQSDLNVNFHENVILTAVSGVSDHVSSFLCSINDDLRSDLKAESVSETRLFTSSSDDLSRETSTSSVVSLESEELMESLSTSTPKRKKSVAANEATSRRKPSPPEKSPSPAELEEFFSEAEKYEQKRFAEKYNYDIVRDVPMEGRYQWFRLHQ 197
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03356 197 Pfam Cyclin-dependent kinase inhibitor 152 194 IPR003175 GO:0004861(InterPro)|GO:0005634(InterPro)|GO:0051726(InterPro)
Tamo4g03356 197 PIRSF CKI-KRP-plant 1 197 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
Tamo4g03356 197 MobiDBLite consensus disorder prediction 1 34 - -
Tamo4g03356 197 MobiDBLite consensus disorder prediction 95 159 - -
Tamo4g03356 197 Gene3D p27 146 197 IPR044898 -
Tamo4g03356 197 MobiDBLite consensus disorder prediction 9 34 - -
Tamo4g03356 197 MobiDBLite consensus disorder prediction 95 134 - -
Tamo4g03356 197 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR 4-RELATED 29 195 IPR044275 GO:0004861(InterPro)|GO:0045736(InterPro)|GO:0051726(InterPro)
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03356 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
166082 Tamo1g04598 Tamo4g03356
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:64989185 Tamo6g02015 Tamo-Chr6:28657195 dispersed
Tamo Tamo-Chr4:64989185 Tamo4g03357 Tamo-Chr4:65000968 tandem
Tamo Tamo-Chr1:109183444 Tamo4g03356 Tamo-Chr4:64989185 wgd
Tamo Tamo-Chr3:9400076 Tamo4g03356 Tamo-Chr4:64989185 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g00068 . 1 294 Core Cell Cycle gene family AT3G48750 37.919 2.50e-69 220.0
Tamo1g00294 . 3 301 Core Cell Cycle gene family AT3G54180 28.696 1.23e-28 112.0
Tamo1g00341 . 10 434 Core Cell Cycle gene family AT5G25380 54.795 7.90e-154 441.0
Tamo1g01477 . 42 167 Core Cell Cycle gene family AT5G10270 88.095 1.42e-80 244.0
Tamo1g02077 . 1 220 Core Cell Cycle gene family AT5G48820 43.534 1.14e-42 142.0
Tamo1g02647 . 19 88 Core Cell Cycle gene family AT1G80370 41.429 3.05e-10 53.9
Tamo1g02734 . 336 390 Core Cell Cycle gene family AT5G10270 72.727 2.01e-15 72.8
Tamo1g02904 . 18 470 Core Cell Cycle gene family AT5G63610 77.754 0.0 717.0
Tamo1g04598 ACH 91 195 Core Cell Cycle gene family AT1G49620 44.444 3.19e-20 82.0
Tamo1g04631 ACH 14 281 Core Cell Cycle gene family AT4G34160 52.158 6.54e-96 289.0
Tamo1g04657 . 16 192 Core Cell Cycle gene family AT1G47210 41.489 5.02e-38 127.0
Tamo1g04686 . 47 282 Core Cell Cycle gene family AT1G70210 44.583 1.66e-60 195.0
Tamo1g04836 . 195 290 Core Cell Cycle gene family AT3G48750 34.694 1.86e-12 62.0
Tamo1g05273 ACH 1 221 Core Cell Cycle gene family AT5G48820 42.562 1.44e-42 142.0
Tamo1g05625 . 1 287 Core Cell Cycle gene family AT3G48750 39.041 4.87e-64 203.0
Tamo1g05805 . 1 434 Core Cell Cycle gene family AT5G06150 53.571 1.72e-152 438.0
Tamo1g05834 . 13 264 Core Cell Cycle gene family AT5G02110 29.63 1.34e-27 108.0
Tamo2g00554 . 21 349 Core Cell Cycle gene family AT5G10270 53.754 1.94e-113 350.0
Tamo2g00563 . 20 307 Core Cell Cycle gene family AT1G76540 34.828 1.18e-54 182.0
Tamo2g02658 . 1 430 Core Cell Cycle gene family AT1G76310 56.92 2.92e-169 480.0
Tamo2g03654 . 99 249 Core Cell Cycle gene family AT5G63610 80.795 2.72e-87 261.0
Tamo2g03923 ACH 4 423 Core Cell Cycle gene family AT2G17620 56.322 2.93e-148 426.0
Tamo2g04156 . 87 146 Core Cell Cycle gene family AT5G67260 63.333 8.34e-21 83.2
Tamo2g04192 . 12 304 Core Cell Cycle gene family AT1G76540 31.629 1.07e-41 148.0
Tamo2g04201 . 12 304 Core Cell Cycle gene family AT1G76540 29.45 2.57e-42 149.0
Tamo2g04221 . 150 195 Core Cell Cycle gene family AT1G49620 63.043 1.10e-15 70.5
Tamo2g04263 ACH 150 195 Core Cell Cycle gene family AT1G49620 63.043 1.34e-15 70.1
Tamo2g04366 . 18 364 Core Cell Cycle gene family AT5G10270 44.092 4.09e-101 314.0
Tamo2g04797 . 232 301 Core Cell Cycle gene family AT1G20930 74.286 4.80e-32 112.0
Tamo3g00168 . 87 146 Core Cell Cycle gene family AT5G67260 63.333 8.34e-21 83.2
Tamo3g00271 . 1 299 Core Cell Cycle gene family AT5G27620 60.133 2.29e-133 380.0
Tamo3g00483 . 274 372 Core Cell Cycle gene family AT3G11520 30.303 4.38e-10 53.1
Tamo3g00515 ACH 175 220 Core Cell Cycle gene family AT5G48820 58.696 3.27e-16 73.2
Tamo3g00590 . 11 365 Core Cell Cycle gene family AT5G67260 44.241 4.81e-95 286.0
Tamo3g00646 . 2 287 Core Cell Cycle gene family AT3G48750 32.333 2.18e-40 144.0
Tamo3g01421 . 237 376 Core Cell Cycle gene family AT5G10270 31.429 3.81e-17 75.9
Tamo3g01974 . 1 363 Core Cell Cycle gene family AT1G47230 55.313 1.01e-144 414.0
Tamo3g02006 ACH 1 363 Core Cell Cycle gene family AT1G47230 54.496 4.67e-143 410.0
Tamo3g02042 . 6 391 Core Cell Cycle gene family AT1G18040 75.255 0.0 594.0
Tamo3g02328 . 87 146 Core Cell Cycle gene family AT5G67260 61.667 1.78e-20 82.0
Tamo3g02663 . 172 450 Core Cell Cycle gene family AT1G15570 69.892 2.49e-143 409.0
Tamo3g03165 . 72 357 Core Cell Cycle gene family AT5G10270 52.797 1.23e-99 303.0
Tamo3g03264 . 3 289 Core Cell Cycle gene family AT3G48750 46.801 2.66e-85 265.0
Tamo3g03306 . 19 304 Core Cell Cycle gene family AT1G76540 25.15 2.63e-26 106.0
Tamo3g03548 . 1 299 Core Cell Cycle gene family AT4G03270 40.705 1.02e-64 204.0
Tamo3g03654 . 18 368 Core Cell Cycle gene family AT5G10270 50.852 1.12e-116 358.0
Tamo3g04380 . 1 294 Core Cell Cycle gene family AT3G48750 86.395 0.0 538.0
Tamo3g04713 . 209 361 Core Cell Cycle gene family AT5G11300 33.333 1.16e-20 93.2
Tamo3g05131 . 12 338 Core Cell Cycle gene family AT1G70210 60.479 3.62e-128 368.0
Tamo4g02606 . 67 240 Core Cell Cycle gene family AT4G03270 26.203 2.09e-09 56.6
Tamo4g02690 . 18 376 Core Cell Cycle gene family AT5G10270 52.5 1.08e-121 370.0
Tamo4g03356 ACH 90 193 Core Cell Cycle gene family AT1G49620 42.982 2.34e-20 82.8
Tamo4g03357 . 91 195 Core Cell Cycle gene family AT1G49620 45.69 9.52e-24 92.0
Tamo4g03388 ACH 14 281 Core Cell Cycle gene family AT4G34160 52.982 4.40e-96 289.0
Tamo5g00312 . 1 317 Core Cell Cycle gene family AT5G27620 59.561 1.16e-137 391.0
Tamo5g00898 ACH 1 222 Core Cell Cycle gene family AT5G48820 44.813 2.47e-46 151.0
Tamo5g01100 . 124 391 Core Cell Cycle gene family AT1G02970 61.94 3.28e-113 332.0
Tamo5g02945 . 92 231 Core Cell Cycle gene family AT5G43080 71.034 3.57e-71 216.0
Tamo5g03591 . 8 302 Core Cell Cycle gene family AT3G54180 25.223 7.73e-13 67.8
Tamo5g04357 . 11 315 Core Cell Cycle gene family AT1G20930 85.902 0.0 558.0
Tamo6g00692 . 17 272 Core Cell Cycle gene family AT5G10270 51.154 1.19e-84 271.0
Tamo6g00768 . 1 1009 Core Cell Cycle gene family AT3G12280 64.971 0.0 1280.0
Tamo6g00903 . 18 160 Core Cell Cycle gene family AT5G10270 45.833 9.94e-36 132.0
Tamo6g01645 ACH 22 349 Core Cell Cycle gene family AT1G20610 54.762 6.03e-111 329.0
Tamo6g02015 ACH 150 195 Core Cell Cycle gene family AT1G49620 71.739 2.25e-17 73.6
Tamo6g02221 . 26 407 Core Cell Cycle gene family AT5G10270 44.792 4.54e-110 338.0
Tamo6g02911 . 139 193 Core Cell Cycle gene family AT1G18040 68.852 7.39e-22 87.8
Tamo6g03362 . 27 437 Core Cell Cycle gene family AT5G06150 54.327 2.95e-146 421.0
Tamo6g03545 . 19 88 Core Cell Cycle gene family AT1G80370 42.857 8.21e-11 55.8
Tamo6g03707 . 20 312 Core Cell Cycle gene family AT1G76540 35.254 8.85e-56 186.0
Tamo6g03728 . 1 290 Core Cell Cycle gene family AT3G48750 73.793 5.26e-168 466.0
Tamo6g03746 . 1 290 Core Cell Cycle gene family AT3G48750 73.103 2.25e-165 459.0
Tamo7g00447 . 19 314 Core Cell Cycle gene family AT3G11520 47.213 5.92e-72 226.0
Tamo7g00753 . 10 290 Core Cell Cycle gene family AT3G48750 35.052 2.89e-57 187.0
Tamo7g01294 . 1 463 Core Cell Cycle gene family AT4G28980 52.654 1.41e-162 466.0
Tamo7g02321 . 18 363 Core Cell Cycle gene family AT5G10270 51.585 1.08e-118 359.0
Tamo7g02524 . 1 290 Core Cell Cycle gene family AT3G48750 37.755 9.28e-70 221.0
Tamo7g03247 . 164 287 Core Cell Cycle gene family AT3G48750 32.624 3.01e-10 59.3
Tamo7g03322 . 1 459 Core Cell Cycle gene family AT1G44110 58.664 0.0 545.0
Tamo7g03443 . 21 374 Core Cell Cycle gene family AT5G10270 44.628 7.14e-98 306.0
Tamo7g03559 . 42 301 Core Cell Cycle gene family AT5G65420 48.134 1.94e-78 241.0
Tamo7g03732 . 7 303 Core Cell Cycle gene family AT4G37630 35.57 4.99e-46 156.0
Tamo7g03977 . 18 365 Core Cell Cycle gene family AT5G10270 46.857 5.30e-106 329.0
Tamo7g04180 . 197 357 Core Cell Cycle gene family AT5G10270 49.689 2.89e-49 169.0
Tamo7g04190 . 18 357 Core Cell Cycle gene family AT5G10270 51.613 1.85e-116 353.0
Tamo7g04195 . 18 357 Core Cell Cycle gene family AT5G10270 51.613 2.08e-116 353.0
Tamo8g00314 . 18 357 Core Cell Cycle gene family AT5G10270 47.522 7.71e-104 324.0
Tamo8g00547 ACH 1 353 Core Cell Cycle gene family AT5G43080 59.14 4.86e-152 431.0
Tamo8g00614 . 18 359 Core Cell Cycle gene family AT5G10270 47.839 2.29e-106 327.0
Tamo8g01483 . 14 304 Core Cell Cycle gene family AT1G76540 26.1 1.46e-28 112.0