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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03364 ATGGCAGACTTCAAACAACCGCATAAGCTTCTGTTCAAACAACGCTCGTGGTCTCCAGACATCAACCGCGACATAGAATGGCAGAAGCTTAAGATCAAACAGCTACGTCGTTACCGTCACCGTCGCAGCAAGAGCATTGACGCTACTCCAGAAGTTGACGTTACTGATGATGATTTAAAGGAGCTTAAAGCGTGTTTTGATTTAGGTTTCGGTTTTGATTTCTCTAGCGATTTGGATCCGAAACTTTCGCAAGCTTTTCCCGCTCTAGAATTGTACGCCGCCGTTAACCGACAGTATAACAGTAGACTCCTGTCAAGGTGTTCGTCGCTAAGTTCTGATTCATCTTCAACCTCGTCAAGTTTCATCTCCACAATTATCGATCCGAGTGATGATCCGCAAAAGGTGAAGACGAAGTTGAAACAGTGGGCGCAAATGGTTTCATGTTCTATTGTGGAAGCTTCTTCACAGCCTGACATGTTGCAGAATAGAAAGACATAA 498 44.38 MADFKQPHKLLFKQRSWSPDINRDIEWQKLKIKQLRRYRHRRSKSIDATPEVDVTDDDLKELKACFDLGFGFDFSSDLDPKLSQAFPALELYAAVNRQYNSRLLSRCSSLSSDSSSTSSSFISTIIDPSDDPQKVKTKLKQWAQMVSCSIVEASSQPDMLQNRKT 165
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03364 165 PANTHER OSJNBA0071G03.3 PROTEIN 9 150 - -
Tamo4g03364 165 Pfam Protein of unknown function (DUF1685) 54 112 IPR012881 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03364 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166354 Tamo2g00211 Tamo4g03364
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:65162895 Tamo6g02010 Tamo-Chr6:28575534 dispersed
Tamo Tamo-Chr2:4340653 Tamo4g03364 Tamo-Chr4:65162895 wgd
Tamo Tamo-Chr3:9652149 Tamo4g03364 Tamo-Chr4:65162895 wgd