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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03370 ATGGCGAATGTATCTTCTTCCTCCTCTCTTTACGCCCTTTTAACTCACCCTTCTCCTCCCGATAACCACTTCGCACCACGAACTTCCTCGTTTTCCTTCCCTCGACAAATTAATGGTTTCTCTGCTCTCTCTTTACGCCAATCCAAAAAGCTCCGAGTCCTCTCCATGCGACGCCAATCTAAAGCAACTGTGGTGTCTGGGCAATCATGGAACGCATCGGTTCTTGACAGCAAAACTGCAGTGTTGGTGGAGTTCTACGCCAGTTGGTGCGGACCATGTCAGATGGTGCACCGAGTGATTGATGAGATTGCCGGCGAGTACGCCGGAAAAGTCAAGTGTTATGTGCTGAACGCCGACCAAGACCCAGGAATTGCAGAGGAATACGATATCAAGGCTGTGCCGATTGTGTTGGTGTTCAAGAACGGTGAGAAGCGTGAGTCGGTGGTTGGGACGATGCCCAAAGAGTTCTATGTGGCCGCCATTGAAAGGGTCTTGGCTTCTTCATCTTGA 510 50.39 MANVSSSSSLYALLTHPSPPDNHFAPRTSSFSFPRQINGFSALSLRQSKKLRVLSMRRQSKATVVSGQSWNASVLDSKTAVLVEFYASWCGPCQMVHRVIDEIAGEYAGKVKCYVLNADQDPGIAEEYDIKAVPIVLVFKNGEKRESVVGTMPKEFYVAAIERVLASSS 169
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03370 169 ProSiteProfiles Thioredoxin domain profile. 51 166 IPR013766 -
Tamo4g03370 169 SUPERFAMILY Thioredoxin-like 58 166 IPR036249 -
Tamo4g03370 169 PRINTS Thioredoxin family signature 81 89 - -
Tamo4g03370 169 PRINTS Thioredoxin family signature 129 140 - -
Tamo4g03370 169 PRINTS Thioredoxin family signature 89 98 - -
Tamo4g03370 169 FunFam Thioredoxin 56 168 - -
Tamo4g03370 169 Pfam Thioredoxin 64 161 IPR013766 -
Tamo4g03370 169 CDD TRX-family 73 162 - -
Tamo4g03370 169 ProSitePatterns Thioredoxin family active site. 82 100 IPR017937 -
Tamo4g03370 169 Gene3D Glutaredoxin 63 168 - -
Tamo4g03370 169 PANTHER GEO12009P1 44 165 - GO:0005737(PANTHER)|GO:0015035(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03370 K03671 thioredoxin
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr4:65289567 Tamo8g00195 Tamo-Chr8:3098709 dispersed