AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo4g03384 ATGGCAATGAAAGCCTGTCATGTCCTGCAGTTCTTCCTACGCCTCACTTTTGTTCTTTCTGTATGGCTTTTAATCATACCGTTCATAACTTTCTGGATATGGCGCTTATCATTTGTCAGAAGTTTTGGTGAAGCCCAAAGACTCTTCCTAAACCATATCTCAACCACAATCATCCTCACCGACTGTCTCCATGGATTCCTCCTCTCCGCCAGCATCGTCTTCATCTTTCTCGGGGCCACATCTTTGAGGGACTATTTTCGCCATTTACGAGAACTCGGGGGTCAGGAAGAGGACGACGGAGATAGAATCGGTGCTCGTGTTGCTAGACGACAACAACAACAACAGCAACAACAACAACAACCTCCACAAGCTAACAGAAACCTTATCAATGGTGAAGATCAAGGTCAAGGTATTGCAGGTGCAGGTCAGATCATTAGAAGAAATGCAGAAAATGTTGCAGCCAGGTGGGAGATGCAAGCAGCTCGCCTTGAAGCACATGTTGAACAGATGTTTGATGGATTAGATGATGATAATGGTGCTGAAGATGTTCCTTTTGATGAGCTTGTTGGTATGCAAGGACCTGTTTTCCATCTAGTAGAAAATGCATTCACTGTTCTTGCAAGCAACATGATATTCCTTGGTGTCATAATCCTCATCCCTTTCCACCTAGGCAGATTCATCCTCTACATTCTATCATCCGCCACCACCCCCGTGTTATCCACCGTGGTCCCCCTCACAGAACAAGCACTTTCACTAGCCAATATCACACTAAAAAACGCACTAACAGCAGTCACAAACTTAACATCCGATCACAATCCCCTGATAAATATCAATAACACCGCTGGAGGAGTTCTACAAGACTCACCAAACAGTCTGAATCTCACAAATCCAGTTATTCTAAAAGGAGCAGTTTCAACTGCATCAAGGCTATCTGATGTGACAACTCTTGCTGTTGGCTATTTATTCATTCTGTCCTTAATTGTTTTCTACATTGGAGTTATTGCACTTATAAGGTACACAAGAGGAGAGCCTTTAACAATGGGAAGATTTTATGGAATTGCTTCAATTGCAGAAACTATCCCTTCACTCTTTAGACAGTTCTTGGCTGCAATGAGACATTTAATGACAATGATTAAAGTCGCGTTTCTTTTGGTCATTGAGCTTGGTGTTTTCCCTCTAATGTGTGGATGGTGGCTTGATATTTGTACCATAAGAATGTTTGGAAAGTCAATTAGTCAAAGAGTTGACTTCTTTTCAGTCTCCCCACTTGCAAGTTCGTTGATTCATTGGGTTGTTGGGATTGTCTACATGTTACAAATATCCATATTTGTCAGCCTTCTTCGAGGGGTTTTGCGAAGTGGGGTTCTTTATTTCTTGAGGGATCCAGCAGATCCTAACTACAACCCCTTCAGGGATTTAATAGATGATCCTGTACACAAACATGCTCGAAGGGTATTATTGTCAATTGGTGTTTACGGGAGCTTAATCGTAATGCTGGTCTTTTTACCAGTTAAACTAGCTATGAGAATGGCTCCTTCCATCTTTCCTCTCGATATATCGGTATCTGATCCGTTCACTGAGATTCCAGCCGACATGCTTCTTTTCCAAATTTGTATTCCGTTTGCTGTTGAGCATTTTAAGTTACGGGCAACAGTGAAATCGATTTTACATTATTGGTTTACTGCGGTTGGTTGGGCACTTGGGCTGACAGATTACTTGTTGCCTGAACCTGAGGATAATGAGGGGCAAAATGGGAATGATTTAGCGTATGATGAAAATCGAGCCATAGTTGGATTGCACCCTCAAGATGTGAACCGTGTTGTGGAAGATGATGATCGTGATGAGCAATCTGATTCAGAGAGGTACACATTTGTGTTGTGTATTATAGTGCTTTTATTGGTGGCATGGATGACACTGTTGATTGTCAATTCTGCTCTGATTGTGGTCCCCGTTTCCCTTGGACGAGTCCTCTTCAATGCCGTTCCCCTTCTTCCTATCGCACATGGCATCAAATGCAACGACATATACGCTTTCATTATTGGAAGCTATGTGATCTGGACAGCACTAGCTGGAGTACGGTATTCCATTGACCAAATCCGAACAAGAAGAACTACACTTTTACTAGCCCAAATCTGGAAATGGTGTTCCATTGTCATCAAGAGCTCCGTACTCTTATCAATCTGGATATTCGTAATCCCGGTCCTAATCGGCCTCCTATTCGAACTCCTAATAATCGTCCCAATGCGGGTCCCAGTAGACGAATCCCCCGTATTTCTCCTATACCAAGACTGGGCCCTAGGACTAATCTTCCTTAAAATCTGGACCCGCCTAGTAATGCTAGACCATGTCCACATGGTCCCCTTAATGTCCGACACCTGGCGGGTGAAATTCGAGCGGGTAAGGGAAGACGGCTTCTCCCGTCTCGAGGCCTTTTGGGTCTTAAAAGAAATAGTAATCCCAATAATGATGAAACTCCTGACTGCTTTATGTGTCCCGTATGTGTTAGCGAGAGGGGTGTTTCCGGTGTTTGGGTACCCGTTGGTTGTGAATTCCGCGGTGTATAGGTTTGCGTGGGTGGGGTGTTTGGGGGTGAGTGTAGTGGGGTTTTGTGGGAAGAGGTTTCATGGGTGGGTTAGTAGTTTGCATAATTCGATTAGGGATGATAGGTATTTGATTGGTAGACGGCTTCATAATTTTGGGGAGGATAGGAATAAGAGTTATGATAATGGTGAGGGGTTGGATTTGGTGGTGAGGAATGATGTGGGGTTGAGGCGTAGAGGGAATGTGGGGGGTGAGAATATGTGA 2805 43.85 MAMKACHVLQFFLRLTFVLSVWLLIIPFITFWIWRLSFVRSFGEAQRLFLNHISTTIILTDCLHGFLLSASIVFIFLGATSLRDYFRHLRELGGQEEDDGDRIGARVARRQQQQQQQQQQPPQANRNLINGEDQGQGIAGAGQIIRRNAENVAARWEMQAARLEAHVEQMFDGLDDDNGAEDVPFDELVGMQGPVFHLVENAFTVLASNMIFLGVIILIPFHLGRFILYILSSATTPVLSTVVPLTEQALSLANITLKNALTAVTNLTSDHNPLININNTAGGVLQDSPNSLNLTNPVILKGAVSTASRLSDVTTLAVGYLFILSLIVFYIGVIALIRYTRGEPLTMGRFYGIASIAETIPSLFRQFLAAMRHLMTMIKVAFLLVIELGVFPLMCGWWLDICTIRMFGKSISQRVDFFSVSPLASSLIHWVVGIVYMLQISIFVSLLRGVLRSGVLYFLRDPADPNYNPFRDLIDDPVHKHARRVLLSIGVYGSLIVMLVFLPVKLAMRMAPSIFPLDISVSDPFTEIPADMLLFQICIPFAVEHFKLRATVKSILHYWFTAVGWALGLTDYLLPEPEDNEGQNGNDLAYDENRAIVGLHPQDVNRVVEDDDRDEQSDSERYTFVLCIIVLLLVAWMTLLIVNSALIVVPVSLGRVLFNAVPLLPIAHGIKCNDIYAFIIGSYVIWTALAGVRYSIDQIRTRRTTLLLAQIWKWCSIVIKSSVLLSIWIFVIPVLIGLLFELLIIVPMRVPVDESPVFLLYQDWALGLIFLKIWTRLVMLDHVHMVPLMSDTWRVKFERVREDGFSRLEAFWVLKEIVIPIMMKLLTALCVPYVLARGVFPVFGYPLVVNSAVYRFAWVGCLGVSVVGFCGKRFHGWVSSLHNSIRDDRYLIGRRLHNFGEDRNKSYDNGEGLDLVVRNDVGLRRRGNVGGENM 934
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo4g03384 934 PANTHER SSM4 PROTEIN 1 905 - GO:0030176(PANTHER)|GO:0030433(PANTHER)
Tamo4g03384 934 Coils Coil 146 166 - -
Tamo4g03384 934 MobiDBLite consensus disorder prediction 108 132 - -
Tamo4g03384 934 MobiDBLite consensus disorder prediction 106 132 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo4g03384 K10661 E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27]
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Event-related genes

Select Gene_1 Gene_2 Event_name
166090 Tamo1g04617 Tamo4g03384
166355 Tamo2g00221 Tamo4g03384
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr1:101805474 Tamo4g03384 Tamo-Chr4:65482752 transposed
Tamo Tamo-Chr2:103828076 Tamo4g03384 Tamo-Chr4:65482752 transposed
Tamo Tamo-Chr1:109670082 Tamo4g03384 Tamo-Chr4:65482752 wgd
Tamo Tamo-Chr2:4556740 Tamo4g03384 Tamo-Chr4:65482752 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo1g04201 . 492 595 HMGR gene family AT4G34100 85.577 4.97e-57 187.0
Tamo1g04617 ACH 67 1067 HMGR gene family AT4G34100 73.088 0.0 1496.0
Tamo2g00221 ACH 67 897 HMGR gene family AT4G34100 70.251 0.0 1174.0
Tamo2g03896 ACH 51 447 HMGR gene family AT1G76490 64.706 0.0 519.0
Tamo2g05207 . 448 611 HMGR gene family AT4G34100 68.824 4.81e-72 234.0
Tamo3g00817 . 68 130 HMGR gene family AT4G34100 41.27 3.92e-11 61.2
Tamo3g03577 . 80 629 HMGR gene family AT1G76490 67.901 0.0 779.0
Tamo3g03665 . 67 121 HMGR gene family AT4G34100 40.0 9.32e-08 49.3
Tamo4g03384 ACH 141 1107 HMGR gene family AT4G34100 71.093 0.0 1340.0
Tamo5g00630 . 67 144 HMGR gene family AT4G34100 30.769 2.41e-11 60.5
Tamo5g01152 . 68 131 HMGR gene family AT4G34100 36.364 1.58e-09 55.5
Tamo5g01589 . 67 118 HMGR gene family AT4G34100 42.308 1.80e-09 56.2
Tamo5g01902 . 212 634 HMGR gene family AT1G76490 79.433 0.0 716.0
Tamo5g01904 . 207 631 HMGR gene family AT1G76490 76.941 0.0 691.0
Tamo5g01908 . 220 632 HMGR gene family AT1G76490 81.356 0.0 716.0
Tamo5g03499 ACH 68 118 HMGR gene family AT4G34100 41.176 3.82e-09 55.5
Tamo5g04360 . 31 632 HMGR gene family AT1G76490 70.407 0.0 866.0
Tamo6g01219 . 37 129 HMGR gene family AT4G34100 30.108 9.67e-10 57.4
Tamo6g01328 ACH 38 132 HMGR gene family AT4G34100 35.0 4.01e-11 61.6
Tamo6g01614 ACH 51 632 HMGR gene family AT1G76490 71.022 0.0 856.0
Tamo7g04006 . 68 118 HMGR gene family AT4G34100 41.071 3.68e-08 52.4