AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo5g03369 ATGTCCAACGAAAAAGAGAGAGAAACTCATGTTTACATGGCGAAGCTCGCCGAACAAGCCGAACGTTACGAAGAGATGGTTGAATGTATGAAGAATGTTGCAAAGCTTAATGTTGAACTTACAGTTGAAGAACGGAACCTACTTTCAGTTGGATACAAAAACGTAATTGGTGCAAGAAGGGCATCATGGCGTATCATGTCATCAATTGAACAAAAAGAGGAATCAAAAGGGAATGAAAGCAATGTGAACCTGATCAAAGGCTACCGCAAAAAAGTCGAAGATGAACTTGCTAAAATCTGCAGTGACATTCTTGAAATCATAGATAAGCATCTCATCCCCTCATCTGGATCAGGAGAAGCCACTGTTTTCTACTACAAGATGAAAGGTGACTACTTCAGATACCTTGCAGAATTCAAGACAGATCAGGAAAGGAAGGATGCTTCTGAAATGTCATTGAAGGGTTATGAGGCTGCTTCTGCTGCTGCAAATACAGATCTTCCTTCAACCCACCCAATTCGATTGGGCTTAGCCCTCAATTTCTCAGTGTTTTACTATGAAATTATGAATTCTCCTGAGAGGGCATGCCATTTGGCTAAACAAGCTTTTGATGAGGCGATTGCTGAGCTGGACTCATTAAGTGAAGAATCTTACAAAGACAGCACCTTGATCATGCAACTCTTGAGAGATAACTTAACTCTTTGGACCTCTGATTTACCTGAAGATGGAGGTGACGAAAACCATCCAAAAGGGGAAGAATCTAAATCAGCGGAACCAGAGGAGAAGAAGCAGTGA 792 41.41 MSNEKERETHVYMAKLAEQAERYEEMVECMKNVAKLNVELTVEERNLLSVGYKNVIGARRASWRIMSSIEQKEESKGNESNVNLIKGYRKKVEDELAKICSDILEIIDKHLIPSSGSGEATVFYYKMKGDYFRYLAEFKTDQERKDASEMSLKGYEAASAAANTDLPSTHPIRLGLALNFSVFYYEIMNSPERACHLAKQAFDEAIAELDSLSEESYKDSTLIMQLLRDNLTLWTSDLPEDGGDENHPKGEESKSAEPEEKKQ 263
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo5g03369 263 SUPERFAMILY 14-3-3 protein 6 237 IPR036815 -
Tamo5g03369 263 MobiDBLite consensus disorder prediction 235 263 - -
Tamo5g03369 263 Pfam 14-3-3 protein 13 235 IPR023410 -
Tamo5g03369 263 Coils Coil 195 215 - -
Tamo5g03369 263 PRINTS 14-3-3 protein zeta signature 119 141 IPR000308 -
Tamo5g03369 263 PRINTS 14-3-3 protein zeta signature 208 237 IPR000308 -
Tamo5g03369 263 PRINTS 14-3-3 protein zeta signature 39 68 IPR000308 -
Tamo5g03369 263 PRINTS 14-3-3 protein zeta signature 88 112 IPR000308 -
Tamo5g03369 263 PRINTS 14-3-3 protein zeta signature 154 180 IPR000308 -
Tamo5g03369 263 PRINTS 14-3-3 protein zeta signature 181 207 IPR000308 -
Tamo5g03369 263 PIRSF 14-3-3 1 247 IPR000308 -
Tamo5g03369 263 MobiDBLite consensus disorder prediction 240 263 - -
Tamo5g03369 263 Coils Coil 13 33 - -
Tamo5g03369 263 ProSitePatterns 14-3-3 proteins signature 2. 217 236 IPR023409 -
Tamo5g03369 263 ProSitePatterns 14-3-3 proteins signature 1. 45 55 IPR023409 -
Tamo5g03369 263 FunFam 14-3-3 protein epsilon 1 248 - -
Tamo5g03369 263 PANTHER 14-3-3 PROTEIN 6 240 IPR000308 GO:0005737(PANTHER)|GO:0007165(PANTHER)|GO:0034613(PANTHER)
Tamo5g03369 263 SMART 1433-4 7 248 IPR023410 -
Tamo5g03369 263 Gene3D - 1 247 IPR036815 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo5g03369 K06630 14-3-3 protein epsilon
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
167402 Tamo3g05012 Tamo5g03369
167762 Tamo5g03369 Tamo6g01260
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:16591973 Tamo5g03369 Tamo-Chr5:78365918 dispersed
Tamo Tamo-Chr5:78365918 Tamo6g00890 Tamo-Chr6:11522548 dispersed
Tamo Tamo-Chr3:105815734 Tamo5g03369 Tamo-Chr5:78365918 wgd
Tamo Tamo-Chr5:78365918 Tamo6g01260 Tamo-Chr6:16561358 wgd
Tamo Tamo-Chr5:78365918 Tamo7g03528 Tamo-Chr7:74855959 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tamo2g00890 ACH 1 263 14-3-3 family AT2G42590 76.426 1.26e-150 419.0
Tamo2g02637 . 26 183 14-3-3 family AT2G42590 77.215 4.29e-85 248.0
Tamo2g03752 . 2 256 14-3-3 family AT1G78300 87.109 1.56e-163 451.0
Tamo3g00872 . 3 254 14-3-3 family AT3G02520 89.286 6.85e-167 460.0
Tamo3g01209 . 2 256 14-3-3 family AT1G78300 86.719 8.00e-163 449.0
Tamo3g01228 . 2 256 14-3-3 family AT1G78300 86.719 4.83e-163 450.0
Tamo3g05012 ACH 27 256 14-3-3 family AT1G26480 86.087 1.51e-150 418.0
Tamo4g02807 ACH 26 263 14-3-3 family AT2G42590 78.151 7.70e-136 380.0
Tamo4g04042 . 121 242 14-3-3 family AT5G65430 89.344 5.26e-78 230.0
Tamo5g03369 ACH 6 256 14-3-3 family AT1G26480 86.111 1.90e-162 449.0
Tamo6g00890 . 6 263 14-3-3 family AT2G42590 78.764 1.68e-148 414.0
Tamo6g01260 ACH 6 264 14-3-3 family AT1G26480 80.695 2.52e-156 434.0
Tamo7g03502 . 2 240 14-3-3 family AT1G34760 75.732 1.07e-136 383.0
Tamo7g03528 ACH 7 266 14-3-3 family AT1G35160 85.115 3.10e-165 456.0
Tamo7g03564 . 1 247 14-3-3 family AT5G10450 85.02 1.50e-158 438.0
Tamo8g00011 ACH 127 259 14-3-3 family AT1G78300 90.226 1.58e-84 248.0