AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo5g03378 ATGGAATTCTGGGTGGTGGCAGCAGCTACGGGTGCAGGTTACGTGGCCAAGCACTGGCAGAACTTATCAGGGGAGAAAGACGGCTCATCTAACTTGTCTCCTGTGGCATCATCACGCCGACAACCAGACGCATGCCAAGTGTTCGATAAAATGCCTAATCCAATTTTCCCATTGCCAAACTTAGCAAAACGATGCTTGTTAGATAGAGACGTTGATCATGTTTCAGGTTTGGGGAAACAAGTAGATCAAAATCACACGGATGAAATCAACGGAACACAAGAGTACTACTTCGACACATCTGTCAATCGTTTACACAAATTCAGAACCAAGAACACGAACACCAAACCATTCTCGAGTCTAAAGCCCTTAGTGTTAACTGGTAACAACAATAATTTAAAAGATCACACAGCCGTGTTCATGGAAGAAAAAGAGAACAGCGCATTCTTTGAACCAATTGGACCAATGAACCTTCCAATAAGACCAGAACAAAAGTTCGACAAAGGCAACGATATGGTGTCCTTGTTTATAGGGATCACAATCGGCATATTATCGACTACCGTGACTACCCAACACGAAATCGAGCATCTAAACGATCTGCTAGAACAAGCCGAGAATATGGTTCGAGATTTACACGATAAACTTGAAAAAAAAGACGGGTTTACCTTAAAAAAACATGGAACGGAGTCAGATGGAACTGCAGTTGATAGTCCAAATCCAAAAGCCGAGAAGTTTGAATTAACGAGTGACATTGAGGCGGAACTTGAAGCCGAGCTTGAACGATTGGAAGAAAATATGAAGAGTTGCTCACTTCAAAGATTGTCTAACGTTGTTGAGATTGATTCAGATTTTGAAGCAGATATGGCTAGAGGAGATTTAAACCTAGACACAGTGACGTGGCACCTTGATAGCCAATCGGAATCAGACCCCAGTGGCAAATCCGTCAAAAGCAGCAAAACCGATGAAACCACCACCAACCCTATTTTCACTCCAAACTACGTCGTTTCTTCAATAGATTTAAAAATACGTCTTCATGAAGTAATCGAATCCAATCTCCAAGCACGTATCAAGGAACTTGAGTCAATTATCAAGGACCAAAATACCCCTCATTCACCGGACCCACAAGAAGAAGAAAACTCTTTTGGGACTTTGACCACACCAGAATCGAATCATTTTCATCAACCCCTTAAAACTATACATACAGAAGTCTACATGTAA 1215 41.73 MEFWVVAAATGAGYVAKHWQNLSGEKDGSSNLSPVASSRRQPDACQVFDKMPNPIFPLPNLAKRCLLDRDVDHVSGLGKQVDQNHTDEINGTQEYYFDTSVNRLHKFRTKNTNTKPFSSLKPLVLTGNNNNLKDHTAVFMEEKENSAFFEPIGPMNLPIRPEQKFDKGNDMVSLFIGITIGILSTTVTTQHEIEHLNDLLEQAENMVRDLHDKLEKKDGFTLKKHGTESDGTAVDSPNPKAEKFELTSDIEAELEAELERLEENMKSCSLQRLSNVVEIDSDFEADMARGDLNLDTVTWHLDSQSESDPSGKSVKSSKTDETTTNPIFTPNYVVSSIDLKIRLHEVIESNLQARIKELESIIKDQNTPHSPDPQEEENSFGTLTTPESNHFHQPLKTIHTEVYM 404
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo5g03378 404 PANTHER EMB|CAB62613.1 1 363 IPR040348 GO:0008356(InterPro)
Tamo5g03378 404 MobiDBLite consensus disorder prediction 363 392 - -
Tamo5g03378 404 MobiDBLite consensus disorder prediction 302 327 - -
Tamo5g03378 404 Coils Coil 193 216 - -
Tamo5g03378 404 Coils Coil 244 271 - -
Tamo5g03378 404 MobiDBLite consensus disorder prediction 364 392 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo5g03378 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5361796 Tamo Tamo3g02496 Tamo-Chr3:68193123 Tamo5g03378 Tamo-Chr5:78450200