AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo6g02401 ATGCGAATCAGTATAACAACAAATCGTAGCCAGTTTCCCGCCGTACACTTAGCTATCTCCTATCTCTCTGCCTCCTCTAATTTTCACTCTACCGGCATGGCCGCCATATCGGAGAATGGCACTACTGGACCTCCGGCGGTTGACGACAATGTCAAAATCGGATTCTTACGGAAGGAGATGAACACGGAGAAACTCGCTGGAACTGCTATCGCTTACGACCGTCATGTTATCCTCTGCTATAAAACACACGAGACGTGGCCTTCTAGAGTTGAATCATCCGACGACCATCCGCTCCCCAAGCTTCTCGCTGCTGCTCTTAAAGCTCGTAAGAACGACATTCCAGTGAAGACTTTATTGACGATATGCGAGGGCCGTGAAGGTACAGACCTATCGGATGGAGATATATTGCTTTTTCCTGAAATGGTCAAGTACAGGGGATTGAAAGAACCAGGAATCAATAGTTTTGTGGATGAAGTGATTGTAAATAGAAAACAATGGTCTACAGGAATCCAAGAAAAGATGACACATTCACACATATTCGTATGTGCTCATAGCAGTCGCGATAAAAGATGTGGTTTTTGTGGGCCAATTTTAATCAAAAAATTCAAAGAAGAAGCCGAATCAAGAGGATTAAAGAACATCTCCGTGACTGCTTGTTCCCATGTTGGCGGTCACAAGTATGCTGGAAATCTTATAATTTATAGTCTTCAAAACAACAAAGTTTGTGGTCACTGGTATGGTTATGTTGCTCCAAATGATGTCCCTGAATTACTTGACAATCACATTGGAAAAGGTCAAATTATCGAGAGACTTTGGAGGGGTCAAATGGGTGTTCCTTCTATGAAGAAACCACAAAAGGCACTTGAACTTGAGCAACCGGTAATCCCAAATGGAAACGATGTGGTTATCGAAAAGAACAGGGACCAAATAAGCGAAACTAAAGAAGATGAGGGGTTAACAAGTAACATTAAAGAAGATGGTGGGGGGTGTTGTCAAGGTGGGAATAGTGGGTTTTCGTGTTGTAGAGATGAAAAAGAGGTGGAAAAACCGGTGAGTAAAATTGATTTGTTGTGGAAAAAGTGGGAGGAGAATGAGATGGTTACGGTGGCTGTTGTGGTGGGAGTGGTGGTAAGTGTTGGTGTGGCGTATAGCTTTTATAAAAGGTTAAGATGA 1173 42.88 MRISITTNRSQFPAVHLAISYLSASSNFHSTGMAAISENGTTGPPAVDDNVKIGFLRKEMNTEKLAGTAIAYDRHVILCYKTHETWPSRVESSDDHPLPKLLAAALKARKNDIPVKTLLTICEGREGTDLSDGDILLFPEMVKYRGLKEPGINSFVDEVIVNRKQWSTGIQEKMTHSHIFVCAHSSRDKRCGFCGPILIKKFKEEAESRGLKNISVTACSHVGGHKYAGNLIIYSLQNNKVCGHWYGYVAPNDVPELLDNHIGKGQIIERLWRGQMGVPSMKKPQKALELEQPVIPNGNDVVIEKNRDQISETKEDEGLTSNIKEDGGGCCQGGNSGFSCCRDEKEVEKPVSKIDLLWKKWEENEMVTVAVVVGVVVSVGVAYSFYKRLR 390
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo6g02401 390 Gene3D Glutaredoxin 175 275 - -
Tamo6g02401 390 SUPERFAMILY Thioredoxin-like 178 279 IPR036249 -
Tamo6g02401 390 Pfam Sucrase-ferredoxin-like 65 274 IPR009737 -
Tamo6g02401 390 FunFam APD1p protein 176 273 - -
Tamo6g02401 390 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 47 379 IPR009737 -
Tamo6g02401 390 CDD TRX-Fd-Sucrase 177 276 IPR009737 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo6g02401 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166929 Tamo3g00088 Tamo6g02401
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:15180818 Tamo6g02401 Tamo-Chr6:37662495 dispersed
Tamo Tamo-Chr3:87224981 Tamo6g02401 Tamo-Chr6:37662495 dispersed
Tamo Tamo-Chr1:102285677 Tamo6g02401 Tamo-Chr6:37662495 transposed
Tamo Tamo-Chr3:1233797 Tamo6g02401 Tamo-Chr6:37662495 wgd