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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo6g02475 ATGGGATCCGGTTCGGGTCAATGGTCTGTTGAAAACAGAGCTCCTCTTAGGACCGAATCTCAGGTGAGTGAGTACGTGCCTGAAACTGGATGTCTCTCGATTATTGTGCTTGGAGCTTCTGGTGATCTTGCGAAGAAGAAGACTTTTCCTGCCCTCTTTCATCTCTACCGTCAGGGATTCATTCAATCACAGGATGTTCATATCTTTGGCTATGCCAGAACCAAAATTTCAGACAACGACTTGAGAGATCGCATTCGTGGATATCTTACACCATGCAAAGGTTTTGAGAGCACACATGAGGAAGACGTAGGCCAGTTTCTCCAACTGATCAAATACGTAGCTGGTGCTTATGACACCGAAGAGGGATTCCGATCATTAGACAAGGAAATATCTGCGTACGAATTATCAAAAAACAGTACAGAAGGATCATCCAGAAGACTCTTCTACCTCGCTCTTCCTCCATCTGTCTATCCACCTGTCTGCAAAATGATAAAGAGTTATTGCATGAATAAATCTGATCTTGGTGGTTGGACTCGAATTGTCGTTGAGAAGCCTTTTGGTAGGGATTTGGCATCTGCTGAAGAACTGAGTGCTCAAATCGGAGAATTGTTTGAAGAACCACAGATTTATCGTATTGATCATTATCTGGGAAAAGAATTGGTTCAAAACTTGATGGTACTCCGTTTTGCAAATCGGTTCTTCTTGCCACTATGGAACCGCGACAACATTTCTAATATTCAGATTGTGTTTAGAGAAGATTTCGGAACTGAAGGTCGTGGTGGATATTTCGATCAATATGGAATAATCAGAGACATCATTCAGAATCATCTATTACAGGTGCTATGCCTAGTTGCTATGGAAAAGCCAGTTTCTCTAAAACCCGAACACGTCCGTGATGAAAAAGTCAAGGTTCTCCAATCTGTTCTTCCAATTGAAGACAGTGAAGTTGTGCTTGGACAATATGAAGGGTACACAGATGACCCCACAGTGCCTGACAACTCAAACACTCCCACTTTCGCCACCATGGTTCTCAGGATACATAATGAAAGATGGGAAGGTGTTCCTTTTATTATAAAGGCAGGAAAAGCATTGAATTCAAGAAAGGCAGAAATTCGGGTGCAGTTTAAGGACGTTCCTGGGGATATTTATAAATGTAAAAAGCAAGGGAGAAATGAGTTTGTGATTAGACTACAGCCTTCAGAGGCCATGTACATGAAGCTAACAGTGAAGCAACCAGGGCTAGAGATGAACACGGTTCAGAGTGAACTGGACTTGTCATATGGGCAACGGTATCAAGAGACCATCATTCCAGAAGCTTATGAACGTTTGATTCTTGACACAATAAGGGGCGACCAACAACATTTTGTTCGCAGAGATGAGCTAAAGGCGGCATGGGAGATATTTACACCGCTTTTACACAAAATCGATAGAGGGGAAGTGAAGTCGCTAAATTACAAGACCGGAAGCAGAGGCCCAGAAGAAGCGGATAAGTTGGCGGAAAAAGTGGGGTTTGTTCAAACGCATGGGTACATATGGATTCCTCCAACTTTGTAG 1554 42.86 MGSGSGQWSVENRAPLRTESQVSEYVPETGCLSIIVLGASGDLAKKKTFPALFHLYRQGFIQSQDVHIFGYARTKISDNDLRDRIRGYLTPCKGFESTHEEDVGQFLQLIKYVAGAYDTEEGFRSLDKEISAYELSKNSTEGSSRRLFYLALPPSVYPPVCKMIKSYCMNKSDLGGWTRIVVEKPFGRDLASAEELSAQIGELFEEPQIYRIDHYLGKELVQNLMVLRFANRFFLPLWNRDNISNIQIVFREDFGTEGRGGYFDQYGIIRDIIQNHLLQVLCLVAMEKPVSLKPEHVRDEKVKVLQSVLPIEDSEVVLGQYEGYTDDPTVPDNSNTPTFATMVLRIHNERWEGVPFIIKAGKALNSRKAEIRVQFKDVPGDIYKCKKQGRNEFVIRLQPSEAMYMKLTVKQPGLEMNTVQSELDLSYGQRYQETIIPEAYERLILDTIRGDQQHFVRRDELKAAWEIFTPLLHKIDRGEVKSLNYKTGSRGPEEADKLAEKVGFVQTHGYIWIPPTL 517
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo6g02475 517 NCBIfam glucose-6-phosphate dehydrogenase 33 504 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 PIRSF G6PD 15 509 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 213 219 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Tamo6g02475 517 FunFam Glucose-6-phosphate 1-dehydrogenase 213 506 - -
Tamo6g02475 517 Hamap Glucose-6-phosphate 1-dehydrogenase [zwf]. 31 514 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 29 512 IPR001282 GO:0004345(PANTHER)|GO:0005829(PANTHER)|GO:0006006(PANTHER)|GO:0006006(InterPro)|GO:0009051(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 35 223 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 Gene3D Dihydrodipicolinate Reductase; domain 2 212 507 - -
Tamo6g02475 517 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 225 503 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 213 510 - -
Tamo6g02475 517 PRINTS Glucose-6-phosphate dehydrogenase signature 255 272 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 PRINTS Glucose-6-phosphate dehydrogenase signature 203 231 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 PRINTS Glucose-6-phosphate dehydrogenase signature 179 192 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 PRINTS Glucose-6-phosphate dehydrogenase signature 350 376 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 PRINTS Glucose-6-phosphate dehydrogenase signature 273 289 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Tamo6g02475 517 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 26 226 IPR036291 -
Tamo6g02475 517 Gene3D - 30 211 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo6g02475 K00036 glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr3:100128161 Tamo6g02475 Tamo-Chr6:39379440 dispersed
Tamo Tamo-Chr4:58092742 Tamo6g02475 Tamo-Chr6:39379440 dispersed