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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo6g02622 ATGGCTGTCAAGACAGCGGTGCAGTTCTCCGACGTGCCCCTTCTCGATCAGGTCAATGAAACCGCCACCTTGTCCCTTTACGCCACCCGTGTGGCCACCTCCGGAGTGGAGGTGAACAATATTCGGAAAAATCTGCCGAAATTCATGGTGGTCGGTCACAGAGGTCATGGCATGAACGTGTTGCTGTCCACGGACAAGAGGATGAACGCTTTTAAAGAAAACTCCATTCTTTCATTCAATAACGCTGCCAATTATCCTCTTGATTTCATAGAATTCGACGTTCAGGTATTCATTTCCGACTTTCCGGTGTCGATCCGCCGCGTATGCTTTTTTCCCACTTTCTTTTTCGAAATTTCAAACTGA 363 47.66 MAVKTAVQFSDVPLLDQVNETATLSLYATRVATSGVEVNNIRKNLPKFMVVGHRGHGMNVLLSTDKRMNAFKENSILSFNNAANYPLDFIEFDVQVFISDFPVSIRRVCFFPTFFFEISN 120
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo6g02622 120 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 20 103 IPR051578 GO:0046475(PANTHER)
Tamo6g02622 120 SUPERFAMILY PLC-like phosphodiesterases 46 96 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Tamo6g02622 120 ProSiteProfiles GP-PDE domain profile. 48 120 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Tamo6g02622 120 Gene3D Phosphatidylinositol (PI) phosphodiesterase 35 103 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Tamo6g02622 120 Pfam Glycerophosphoryl diester phosphodiesterase family 53 96 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo6g02622 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166726 Tamo2g04544 Tamo6g02622
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr6:9672185 Tamo6g02622 Tamo-Chr6:44394974 dispersed