AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo6g02625 ATGAAGTCATCGCTGGGGAAACTCGGGAGGAAATTATCTTTACAGAAGAGCGATGTGAAGGAGACAAGGGATCATCAGCCTTCCGCCCATATAGACGAGATTGCTCAAGCTTCAAAGGATATGCAAGATATGCGAAACTGCTATGATGGTTTATTATCTGCAGCAGCTGCAACAGCAAACAGTATATACGAATTTTCGGAGTCACTAAATGAAATGGGGAGCTGTTTGCTAGGGAAAACCGGTGCTGATGCTGATGGTGAAAGTGGAAAAATGCTATCAACTTTAGGGGATATGCAATTGGAACTTCAGAAAATTGCTGATACATATCGATCTGATGTGGTTGTGACAATCACCAACCCCTCAGAGTCTCTCCTTAGTGAGCTACGGAAAGTGGAGGAAATGAAGCTTCAATGTGATGAAAAAAGGGAGGTGTATGAATACATGATGGCACAACAAAGAGAGAAGGGGAAATTAAGGAATGGAAAAGTTGACCAAAAACTAAAAGAAGCTCAAGAGGAATTTGATGAGGCAGCAAGGCTTTGTGTTTTTAGGGTGAAATCACTTAAAGAGGGACAATGTCGTAGTCTTTTAACCCAAGCTGCCCGACATCATGCTGCCCAGGTGAGTTTTTTTCGGAAGGGACTGAAAGTTCTAGAAGCAGTGGAACCTTCCATAAGAAATGTTGCGGAAAAACATCGGATTGATTACCAAATAAGTGGATTATATGATGAGGGAGGGGAACCCATGAGTGGATATGAAAGCACAGATGATGGAGAATTGAGTTTTGATTATAATAAACAGAAGAAACACGTGCTTGATGATGATGATGATGATGATGGCAGCTCGCCCAATCCAATGGAGCTGGACAAAGTGGACGTTCCAAATCTTGATGATTCAGAGATAAATCGGAATAAACAAGTTTTTGGTAGGCAACCAAGAGTAAGCAGCTATTCGGCCCCACTATTCCCCGACAAAATCGACACATCAGAAAAACCAAAAGCATCACAACCACCACGCAAATTCTACTCTTATGTCCTTCCTCCTCCCACCCGGAATCCCAATTCCAGACCACCCTCCAATTCCATTCCATTCCAACCTCCAATTCCATCCGACACCGATTCCAATTCCGCCACCCAACTACCCGCCCCAATTGACAAAGTCCCCCAACGACAATCCTATTCCGGCCCGTTACCACCAAGCCGACAATTCTCGTTCAACATCGCGTCCACTAGCGGCCCCACCACCTCCGAGCTTCCACAACCGCCGTCGCGGATTCCGGTGGCGGCTCAGCCTTCCCGGAGTGCATCGCCGCCGCCCATCTCCTCCCCTAAAATAAGCGAGCTTCATGAGCTTCCAAGGCCTCCCACTAATCTACCATTTTCTAAATCGGGTGCTAATAATAATGTGAGTAGACATTCAGCTCCTTTGTATTCCAAGAATCAAGAAATCTCGCCACCGAATAAACGCGCGATGTTGTCGTCGATTTCCGCGTCCCCACTTCCACTCCCGCCTTTGGTTGTTCCCAGAAGCTTTTCCATACCCTCCAAGGGAAATGACCTTAATACCCTCGGGTAA 1575 46.03 MKSSLGKLGRKLSLQKSDVKETRDHQPSAHIDEIAQASKDMQDMRNCYDGLLSAAAATANSIYEFSESLNEMGSCLLGKTGADADGESGKMLSTLGDMQLELQKIADTYRSDVVVTITNPSESLLSELRKVEEMKLQCDEKREVYEYMMAQQREKGKLRNGKVDQKLKEAQEEFDEAARLCVFRVKSLKEGQCRSLLTQAARHHAAQVSFFRKGLKVLEAVEPSIRNVAEKHRIDYQISGLYDEGGEPMSGYESTDDGELSFDYNKQKKHVLDDDDDDDGSSPNPMELDKVDVPNLDDSEINRNKQVFGRQPRVSSYSAPLFPDKIDTSEKPKASQPPRKFYSYVLPPPTRNPNSRPPSNSIPFQPPIPSDTDSNSATQLPAPIDKVPQRQSYSGPLPPSRQFSFNIASTSGPTTSELPQPPSRIPVAAQPSRSASPPPISSPKISELHELPRPPTNLPFSKSGANNNVSRHSAPLYSKNQEISPPNKRAMLSSISASPLPLPPLVVPRSFSIPSKGNDLNTLG 524
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo6g02625 524 MobiDBLite consensus disorder prediction 1 30 - -
Tamo6g02625 524 MobiDBLite consensus disorder prediction 350 365 - -
Tamo6g02625 524 MobiDBLite consensus disorder prediction 366 382 - -
Tamo6g02625 524 SUPERFAMILY BAR-IMD domain-like 33 226 IPR027267 -
Tamo6g02625 524 MobiDBLite consensus disorder prediction 459 494 - -
Tamo6g02625 524 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 366 518 IPR037488 -
Tamo6g02625 524 MobiDBLite consensus disorder prediction 13 30 - -
Tamo6g02625 524 Gene3D Arfaptin homology (AH) domain-BAR domain 26 237 IPR027267 -
Tamo6g02625 524 CDD BAR 40 224 - -
Tamo6g02625 524 Coils Coil 160 180 - -
Tamo6g02625 524 MobiDBLite consensus disorder prediction 393 418 - -
Tamo6g02625 524 MobiDBLite consensus disorder prediction 270 501 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo6g02625 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
166727 Tamo2g04546 Tamo6g02625
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr2:94816963 Tamo6g02625 Tamo-Chr6:44514647 dispersed