AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tamo6g02676 ATGGCTGCGGATCAGCTGAATAAACGGTCTAAATCAAGCAATGTGATCCGCCACACTTCTTATGAGCTTCAAAAAGCAAAAAAGAAGAAATTCTCTCATCATGATTTGAATATGAAATCAAGTATTTCTCTTGAATGGGATGACAAGAAAGAACAAGTTGTTCCTAAAAAGGAGCAGATAGGTATAGCCCGAAGAGACTTGACTCCATTTCTTTCTGTTCTTCCACATTCCCAAAATGCCCTTGGTGATGTCTTTGCTGCTCCTTCTGAGTTGTTTAAACTCGATAACTTGACCGGATTGCTATCTTATGAGGTTTGGCAAACTCATTTGTCTGTACAAGAAAGAGGGTTTCTGACTCAGTTTCTTCCTGAAGGAGTCGAACCGCATAAAATAGTTCATGAATTGTTAGGTGGGAATAATTTTCACTTTGGAAACCCTTTCATGAAATGGGGTTCTTCAGTTTGTTCAGGGGATTGTCATCCTGATGCCATTCTTCGTCAAGAACAATGTAACAAGGCTAACAAAATTGCATATTATTCCGAATTGCATAAGTATCATACCAAAATGATAGGAAATCTGCAATTGTGGAAGGAAAAATGGGCAAGCTGTGTGAATCCCGAAAACGAGTTTACACAAAAGATAATGAGGTCCAAAAAGGATATTCACAAAAGTGGGTCCTCACATTCACATGAGAACAAGGGCATACAAGAAGATGATGTTGGTGCAACTTCTGAATCTTGTTCTTGGGATGCTGATGATAAATCATATAGTAGCGATAGCCCAAATTTAGCAATTACAAATGGTGAAACTATAATGAGGCTCTCGAAAAACAAACATTATGAGTCTTCAGGAGGATCGGTAGCAAGATCTAGAAAAGGAGATAAAGTATGCAGGCTTAATACAGAGTGCGATGATGGTGCCAAATACATGTCGTATATCAAGGTGAGCAAGGAGCAGCATGAACGAGTAAAGAGCAGCATGAAACAGTCAAAGACGAGTATTCAGCCCAGGTCTCTTAATCATGTTTTAGGGAATCTTGATAGCTTCTGTGTTCAGCCTTTTGAAGTCTTTGAGGAAGAGGAGAGACAAAACCTCCATCACCACTGGTTGCATTTAGCAAAAGAAGATCTCCCTGCAGGCTTTAAAAACTGGAAAAGCTGGCAATCTGCCAAGTGGCAATTGACTCTGTCTTTGAGGAAAGAACTGGAAGATAAAAGGAAGCCAATTGATCTGCCCTTGTCTCACAATGAGGATGAAGAAACTCAAATCTTGCTACTTGATGATGATGTCACTCACAATCATGATTCCGACAATGTGCTCATCAACCCTAAGGATGAAGAGCCACAGCAGTTGGTAGGTAACCTCTGTGATGATGAGCAACAATCTGATGAAGAAACAAATGATGTCCTTTTAGTTACACCACAGGATACCATGGAACGGAATGACGAATCCCTATTCCGGTCAGATCCAGATCTTAATGCCACAATGCAAATAGAACAACAAATAGAGGAATCCAATCAAGAATCTGCCCTTCTGACTATCCATGACAACAACCAAAACTTCAACAATGTTTTGACCGAACCCGACCCTTTCCCTTCCAATCTCCACCAATATACCGAAAACGCCCCTACTCAACAGTTTCCTCTGCCACCTGCCACCACTGAAATATGGCCGTCCACCACCCTACCTACCACCTACTACCATCAACCGCCGCCAGTCACCCATGGATACACTTCCATGGGTGGTACTGGTACTGGTGGCGATTCTTTTTTTTATCCGTATGCAAATCAAGACACCCGTAACGAATTACTACTCCATTCGTTATTCAAAGATCCCGGGAGTTCTTACCTTCATGATCATAAACTCTCCCGCCTCGGTTACCACCCCACTGGCGGCGATCCGGTGGCGGCCACCACCAGTCAGTATTCAAGAAACTTGTCAAGCATTCAAGAAAACATATACGCGGATGGAGGTGGTGGTCGGTTCTCGGTTCCAAGGCAAGAACACTTGCTCCCGCTTCACGATTGGCCTGGAACCACCCATCCACCGCCCATTCAAACCTGGTTTTCCGGCGATGAGGTGGCACGCGATGGGTGGTCCGGGAACCATGACATCGGAACCGGCGGTGTGGCGGATGAAAGCTTGTTCAGTGTTTTGTCTCAGTGTAACGGGCTGCGTTCGTCAGGTGAGTTTGTTCAGTCAGGGAACTATGGCGGGGTTGGGCGGCAGATGGGTGGCAATGGGGTGACACCTCGGGCAGGTGTTAACTACATGAGTGGGAATGAAGGGCAGTCTGGGGCAGGAGGGGCGGGCAGCAATGGTTTGGGGTGGATGAATTTGCCAAAATCGTATCAGAGATCGTGGAATGCGAATGAGTTAGGATGA 2385 44.57 MAADQLNKRSKSSNVIRHTSYELQKAKKKKFSHHDLNMKSSISLEWDDKKEQVVPKKEQIGIARRDLTPFLSVLPHSQNALGDVFAAPSELFKLDNLTGLLSYEVWQTHLSVQERGFLTQFLPEGVEPHKIVHELLGGNNFHFGNPFMKWGSSVCSGDCHPDAILRQEQCNKANKIAYYSELHKYHTKMIGNLQLWKEKWASCVNPENEFTQKIMRSKKDIHKSGSSHSHENKGIQEDDVGATSESCSWDADDKSYSSDSPNLAITNGETIMRLSKNKHYESSGGSVARSRKGDKVCRLNTECDDGAKYMSYIKVSKEQHERVKSSMKQSKTSIQPRSLNHVLGNLDSFCVQPFEVFEEEERQNLHHHWLHLAKEDLPAGFKNWKSWQSAKWQLTLSLRKELEDKRKPIDLPLSHNEDEETQILLLDDDVTHNHDSDNVLINPKDEEPQQLVGNLCDDEQQSDEETNDVLLVTPQDTMERNDESLFRSDPDLNATMQIEQQIEESNQESALLTIHDNNQNFNNVLTEPDPFPSNLHQYTENAPTQQFPLPPATTEIWPSTTLPTTYYHQPPPVTHGYTSMGGTGTGGDSFFYPYANQDTRNELLLHSLFKDPGSSYLHDHKLSRLGYHPTGGDPVAATTSQYSRNLSSIQENIYADGGGGRFSVPRQEHLLPLHDWPGTTHPPPIQTWFSGDEVARDGWSGNHDIGTGGVADESLFSVLSQCNGLRSSGEFVQSGNYGGVGRQMGGNGVTPRAGVNYMSGNEGQSGAGGAGSNGLGWMNLPKSYQRSWNANELG 794
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tamo6g02676 794 PANTHER NFRKB-RELATED 645 789 IPR024867 GO:0031011(InterPro)
Tamo6g02676 794 MobiDBLite consensus disorder prediction 218 238 - -
Tamo6g02676 794 MobiDBLite consensus disorder prediction 218 246 - -
Tamo6g02676 794 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 88 199 IPR044867 -
Tamo6g02676 794 CDD DEUBAD-NFRKB 90 196 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tamo6g02676 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tamo Tamo-Chr6:46199367 Tamo6g02676 Tamo-Chr6:46375776 proximal