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AGRP

Asteraceae Genomic Research Platform

AGRP Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi11g00992 ATGCCTGAGATCAGAGATCCGGCGATCAAGCTCTTCGGGAGGACGATTCCGTTGCCGGAAAGTCAGATTCCGGCCGATTCTCGAGAGAAATCCGATCTGGAGTGTCGGGTTCTTGAGAAGTCTGAACTTATGGATACACATGTAGAAGCAAAAAGGATAGAAATTGAGGACCCTCTTGTAGAAGAGTCTGGGAGGCCAGATAAGTGTTCCGCTTTATCCTGTGGTAAGGAAGAGGACCACCAAACTCCTACCCAGGAGAATAAGAGTATAATACATCGTAAGCCCGAGGAAGAGCAGGCTGAAACCGATATGGCATGCCAAGAGAAGGTTCTTAAGAAGCCAGACAAGGTCCTCCCATGTCCTCGCTGCAACAGCTTAGACACAAAGTTCTGCTACTACAACAATTACAACGTCAGCCAACCTAGACACTTCTGCAAGAACTGCCAGAGATATTGGACGGCGGGGGGTACAATGAGAAATGTTCCTGTTGGTGCCGGACGGCGGAAGAATAAGCACTGTGCCTCGCAGTACCATCACATAGTGGTGTCCTCTGATGGAACACCAACCACCCGGGTCGACCCCCCTGACTCAGTCAGTCACCAAGTTCTCTCATGTGGGGGGCTTTCAACCACTTCAAGTCATTTGAAGGGAAATGGGACAGTCCTAAACTTTGGCCCTGGTGGACCTCTCTGTGAATCCATGGCAACCGTCCTTAATCTTGGAGACCAGAAAAGAAGCGTCGAGACGGGTTCTGAGGCTTGTGGTGAAAGTAGAGAGGAGCCTTCCTCATGTGCCTCTTCCTTGACAGCCTCTACTTGCCAGGACAATGATTTGACCAAAAATGTGATTCCAGTGGTGCAAGGTGGTATGCCTGAATATTGTAACAGGCTTACTACTCCTACACATCCTCTGCAGTGTTACCCTGGTCCTCCATGGGCTTTCACTTGGAATCCAAGTTGGAATAATGCAGCTGCCATGGCGGTAGGTCGTTGCTCTTCTGAGCTGGTTTATGGATCAGATGGCAGTAACCCCAATTCAGTTCAATGGGGTTCCCCACCAATGGTGGCAGTTCCTGGATTTTGCCCACCAAGCATCCCTTTCCCTTTCGGCCCTGCTTCCTATTGGGGTTGTATTCCTGACTGGGCTGCCAGAACATGGAATGTTCCGTTAGTTGGATCTAATGGCAGCCTATCGCCATCGTCCTCTACTTGCAACAGTGGTGGTTCTGGAAATGGATCTCCAACCTTAGGCAAGCATTCCAGAGATGCGAATTTACAGGGGGAAGAGAAATTGGAAAATTGTCTCTGGGTTCCCAAGACGCTGAGAATTGATGACCCAAATGAGGCTGCTAGGAGCTCTATCTGGGCTACTTTAGGAATTAAGCCTGATCAGAATGATGAACTCATAGCAAAAGGTGGTATTTTCAAAGCTTTCCAACCCAAAGCAGATAGTAAGAGCAATTCATCCGATGCCACTACGGTATTACAAGCAAATCCAGCAGCTCATTCTCGCTCTCAAACATTCCAAGAGACCACATAA 1539 48.8 MPEIRDPAIKLFGRTIPLPESQIPADSREKSDLECRVLEKSELMDTHVEAKRIEIEDPLVEESGRPDKCSALSCGKEEDHQTPTQENKSIIHRKPEEEQAETDMACQEKVLKKPDKVLPCPRCNSLDTKFCYYNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHCASQYHHIVVSSDGTPTTRVDPPDSVSHQVLSCGGLSTTSSHLKGNGTVLNFGPGGPLCESMATVLNLGDQKRSVETGSEACGESREEPSSCASSLTASTCQDNDLTKNVIPVVQGGMPEYCNRLTTPTHPLQCYPGPPWAFTWNPSWNNAAAMAVGRCSSELVYGSDGSNPNSVQWGSPPMVAVPGFCPPSIPFPFGPASYWGCIPDWAARTWNVPLVGSNGSLSPSSSTCNSGGSGNGSPTLGKHSRDANLQGEEKLENCLWVPKTLRIDDPNEAARSSIWATLGIKPDQNDELIAKGGIFKAFQPKADSKSNSSDATTVLQANPAAHSRSQTFQETT 512
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi11g00992 512 MobiDBLite consensus disorder prediction 71 102 - -
Tesi11g00992 512 Pfam Dof domain, zinc finger 116 172 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi11g00992 512 PANTHER CYCLIC DOF FACTOR 2 1 512 IPR045174 GO:0003677(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0006355(InterPro)
Tesi11g00992 512 MobiDBLite consensus disorder prediction 397 422 - -
Tesi11g00992 512 MobiDBLite consensus disorder prediction 480 512 - -
Tesi11g00992 512 MobiDBLite consensus disorder prediction 57 102 - -
Tesi11g00992 512 MobiDBLite consensus disorder prediction 397 420 - -
Tesi11g00992 512 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Tesi11g00992 512 MobiDBLite consensus disorder prediction 481 512 - -
Tesi11g00992 512 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi11g00992 K16222 Dof zinc finger protein DOF5.5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr11:22318672 Tesi4g01327 Tesi-Chr4:50064315 dispersed
Tesi Tesi-Chr11:22318672 Tesi7g01018 Tesi-Chr7:23227488 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00039 . 65 296 C2C2-Dof Transcription Factor family AT3G61850 37.722 1.25e-31 117.0
Tesi1g01305 . 63 296 C2C2-Dof Transcription Factor family AT3G61850 49.63 6.51e-68 210.0
Tesi1g01801 . 27 308 C2C2-Dof Transcription Factor family AT1G28310 36.508 4.29e-39 138.0
Tesi1g01865 . 20 132 C2C2-Dof Transcription Factor family AT1G51700 46.903 4.42e-31 113.0
Tesi2g01220 . 5 136 C2C2-Dof Transcription Factor family AT2G34140 51.471 1.21e-40 131.0
Tesi2g01305 . 27 311 C2C2-Dof Transcription Factor family AT1G28310 41.118 3.67e-43 149.0
Tesi2g01306 . 34 123 C2C2-Dof Transcription Factor family AT5G60850 63.333 6.81e-34 122.0
Tesi2g01508 . 6 316 C2C2-Dof Transcription Factor family AT5G65590 40.857 2.70e-64 204.0
Tesi3g00498 . 5 160 C2C2-Dof Transcription Factor family AT2G34140 53.75 5.09e-53 164.0
Tesi3g00673 . 27 311 C2C2-Dof Transcription Factor family AT1G28310 43.092 2.68e-47 160.0
Tesi3g00674 . 31 110 C2C2-Dof Transcription Factor family AT5G60200 66.25 3.16e-33 120.0
Tesi4g01327 . 3 457 C2C2-Dof Transcription Factor family AT5G39660 43.75 7.31e-117 350.0
Tesi4g01457 . 48 116 C2C2-Dof Transcription Factor family AT5G60850 82.609 4.77e-36 130.0
Tesi5g00493 . 6 316 C2C2-Dof Transcription Factor family AT5G65590 40.634 1.11e-58 189.0
Tesi5g00732 . 44 126 C2C2-Dof Transcription Factor family AT5G60850 65.06 3.70e-35 126.0
Tesi5g00739 . 1 181 C2C2-Dof Transcription Factor family AT5G66940 41.935 1.75e-35 121.0
Tesi6g00390 . 18 117 C2C2-Dof Transcription Factor family AT3G52440 54.167 2.64e-36 129.0
Tesi6g00733 . 7 316 C2C2-Dof Transcription Factor family AT5G65590 38.504 4.05e-55 181.0
Tesi6g01109 . 1 118 C2C2-Dof Transcription Factor family AT5G66940 54.237 6.88e-38 127.0
Tesi6g01118 . 48 126 C2C2-Dof Transcription Factor family AT5G60850 67.089 5.77e-34 124.0
Tesi7g00315 . 46 288 C2C2-Dof Transcription Factor family AT2G28510 43.494 3.85e-48 164.0
Tesi7g00436 . 1 321 C2C2-Dof Transcription Factor family AT3G55370 42.077 4.90e-64 204.0
Tesi7g00931 . 13 247 C2C2-Dof Transcription Factor family AT3G52440 40.214 6.21e-44 147.0
Tesi7g01018 . 1 457 C2C2-Dof Transcription Factor family AT5G39660 36.429 2.50e-81 259.0
Tesi9g00184 . 55 116 C2C2-Dof Transcription Factor family AT1G51700 48.387 2.04e-13 66.2
Tesi9g00861 . 18 177 C2C2-Dof Transcription Factor family AT1G51700 54.545 1.75e-44 145.0
Tesi10g00854 . 3 457 C2C2-Dof Transcription Factor family AT5G39660 44.656 4.42e-110 332.0
Tesi10g01032 . 34 307 C2C2-Dof Transcription Factor family AT5G60850 40.753 9.33e-49 162.0
Tesi10g01062 . 1 372 C2C2-Dof Transcription Factor family AT5G62940 40.0 6.95e-54 178.0
Tesi11g00418 . 1 321 C2C2-Dof Transcription Factor family AT3G55370 43.094 1.05e-67 213.0
Tesi11g00553 . 46 288 C2C2-Dof Transcription Factor family AT2G28510 42.007 1.82e-49 163.0
Tesi11g00992 . 2 446 C2C2-Dof Transcription Factor family AT3G47500 36.932 1.41e-78 251.0
Tesi12g00685 . 13 209 C2C2-Dof Transcription Factor family AT3G45610 38.956 1.57e-41 140.0
Tesi12g00827 . 1 321 C2C2-Dof Transcription Factor family AT3G55370 42.192 9.91e-64 203.0
Tesi13g00227 . 46 288 C2C2-Dof Transcription Factor family AT2G28510 38.628 9.09e-44 150.0
Tesi17g00517 . 27 142 C2C2-Dof Transcription Factor family AT1G28310 60.684 6.28e-36 134.0
Tesi17g00572 . 42 113 C2C2-Dof Transcription Factor family AT5G60200 65.432 1.87e-29 116.0
Tesi18g00366 . 34 299 C2C2-Dof Transcription Factor family AT5G60850 40.283 2.82e-50 167.0
Tesi18g00611 . 101 457 C2C2-Dof Transcription Factor family AT5G39660 46.154 3.23e-100 307.0
Tesi18g00895 . 1 372 C2C2-Dof Transcription Factor family AT5G62940 40.741 8.21e-52 172.0
Tesi19g00198 . 18 158 C2C2-Dof Transcription Factor family AT1G51700 57.143 2.20e-44 145.0
Tesi21g00115 . 63 296 C2C2-Dof Transcription Factor family AT3G61850 50.0 1.05e-64 201.0
Tesi22g00824 . 63 288 C2C2-Dof Transcription Factor family AT3G61850 48.302 1.11e-63 202.0
Tesi23g00297 . 63 217 C2C2-Dof Transcription Factor family AT5G62940 50.968 3.07e-40 143.0
Tesi23g00553 . 34 109 C2C2-Dof Transcription Factor family AT5G60850 78.947 2.00e-39 134.0
Tesi24g00502 . 204 257 C2C2-Dof Transcription Factor family AT5G65590 53.731 1.83e-15 68.6
Tesi24g00503 . 78 145 C2C2-Dof Transcription Factor family AT2G37590 77.941 1.41e-36 127.0
Tesi24g00580 . 3 253 C2C2-Dof Transcription Factor family AT3G50410 46.215 2.72e-52 167.0
Tesi24g00583 . 9 94 C2C2-Dof Transcription Factor family AT5G65590 62.791 4.08e-33 122.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi zf-Dof 9.9e-32 No_clan TF C2C2-Dof