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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi11g01466 ATGTCTCTATGTTTCCTCTCTCTCCTCTACTTCTCTCGCGCCATTACGGACAACTCCGTCGACCTCCCTACCGTTATGAATAACGATTTCCACGATCTCCTTCCCCAATTCGGATTCCCAAAGGGTATACTCCCTGACGGTGTTAAATCCTACTCGATCTCCGATGACGGAGACTTCAAGATCGAGCTCGAACGCCCGTGTTACGTTCAGTTCGACGAACTCGTCTATTATGATAAGAAGATTAATGGGAAAATGAGGTACGGGGTTGTTTCTGATGTATCTGGAATTCAGGCGAAGAAATTGTTCGTTTGGGTGCCTGTAACTGGAATGGAAGTCGATTCAGACTCGGGTCTGATCGAATTTCATGTGGGGTTTTTGTCCGAGAAGTTACCGGCAGACCAGTTTCAGACTATTCCGATATGTAAGAGCAAGGCGTATGGAGGGATAAACCAAGAATCTTCCTTGATTTCGGAGGTAATCTACTTCTAA 489 45.81 MSLCFLSLLYFSRAITDNSVDLPTVMNNDFHDLLPQFGFPKGILPDGVKSYSISDDGDFKIELERPCYVQFDELVYYDKKINGKMRYGVVSDVSGIQAKKLFVWVPVTGMEVDSDSGLIEFHVGFLSEKLPADQFQTIPICKSKAYGGINQESSLISEVIYF 162
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi11g01466 162 Pfam Protein of unknown function, DUF538 31 136 IPR007493 -
Tesi11g01466 162 SUPERFAMILY At5g01610-like 18 142 IPR036758 -
Tesi11g01466 162 Gene3D - 16 143 IPR036758 -
Tesi11g01466 162 PANTHER T31J12.3 PROTEIN-RELATED 27 142 IPR007493 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi11g01466 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr11:43077378 Tesi20g00961 Tesi-Chr20:24172846 dispersed
Tesi Tesi-Chr11:43077378 Tesi7g01500 Tesi-Chr7:45861567 wgd