AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tesi13g00858 | ATGCTTCGCCGACGATGTGTTGAGAAATGCATTTTGGCGCCCTACTTCCCACCAACTGAACCGCTCAAATTTAAGATTGCCCATAGAGTGTTCGGCGCCAGCAGCATCGTGAAGTTTTTGCAGGATCTTCCAGAGTCACATAGAGCAGATGCAGTGAGTAGCATGGTTTATGAGGCAAATGCCAGGATTAGAGACCCAGTTTATGGCTGTGCCGGGTTAATTTGCCAGCTCCAAAAACAAGTAAACGAGCTCCAAGAACAATTGGCAGAGGCACAAGCCGAGATTTTCAACCTGAAATTCCAGCAGGCGAACATGATAGCCCTAATTAGTATGGGAATGGAAAAATCTCAACAAAATATGTTGCAACAAACATATGAAAACTTCGAGAATAATGCTAATTTAGAGCACGACAATGTAGGTTCACTTTGGCAACCTGATTGGATTTGA | 447 | 43.85 | MLRRRCVEKCILAPYFPPTEPLKFKIAHRVFGASSIVKFLQDLPESHRADAVSSMVYEANARIRDPVYGCAGLICQLQKQVNELQEQLAEAQAEIFNLKFQQANMIALISMGMEKSQQNMLQQTYENFENNANLEHDNVGSLWQPDWI | 148 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tesi13g00858 | 148 | ProSiteProfiles | LOB domain profile. | 1 | 95 | IPR004883 | - | |
| Tesi13g00858 | 148 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 1 | 123 | - | - | |
| Tesi13g00858 | 148 | Pfam | Lateral organ boundaries (LOB) domain | 1 | 92 | IPR004883 | - | |
| Tesi13g00858 | 148 | Coils | Coil | 74 | 101 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tesi13g00858 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 5406431 | Tesi | Tesi11g00562 | Tesi-Chr11:10496727 | Tesi13g00858 | Tesi-Chr13:24980984 | |
| 5407673 | Tesi | Tesi12g00680 | Tesi-Chr12:34089428 | Tesi13g00858 | Tesi-Chr13:24980984 | |
| 5408184 | Tesi | Tesi13g00222 | Tesi-Chr13:4664821 | Tesi13g00858 | Tesi-Chr13:24980984 | |
| 5408666 | Tesi | Tesi13g00858 | Tesi-Chr13:24980984 | Tesi7g00306 | Tesi-Chr7:5545052 | |
| 5430578 | Tesi | Tesi13g00710 | Tesi-Chr13:17220564 | Tesi13g00858 | Tesi-Chr13:24980984 | |
| 5440579 | Tesi | Tesi13g00858 | Tesi-Chr13:24980984 | Tesi7g01082 | Tesi-Chr7:28563933 |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Tesi1g00048 | . | 33 | 152 | LBD gene family | AT1G07900 | 50.0 | 3.06e-43 | 139.0 | |
| Tesi1g01315 | . | 33 | 187 | LBD gene family | AT1G07900 | 42.308 | 7.12e-42 | 136.0 | |
| Tesi7g00070 | . | 6 | 140 | LBD gene family | AT2G40470 | 88.889 | 2.19e-73 | 223.0 | |
| Tesi7g00306 | . | 28 | 189 | LBD gene family | AT1G07900 | 62.573 | 2.53e-73 | 218.0 | |
| Tesi7g01082 | . | 30 | 186 | LBD gene family | AT1G07900 | 58.282 | 3.03e-63 | 196.0 | |
| Tesi10g00495 | . | 1 | 263 | LBD gene family | AT3G02550 | 52.787 | 4.38e-94 | 277.0 | |
| Tesi11g00065 | . | 5 | 176 | LBD gene family | AT2G40470 | 75.145 | 3.16e-75 | 225.0 | |
| Tesi11g00162 | . | 1 | 111 | LBD gene family | AT3G11090 | 77.477 | 2.05e-60 | 183.0 | |
| Tesi11g00562 | . | 31 | 189 | LBD gene family | AT1G07900 | 69.643 | 5.90e-74 | 219.0 | |
| Tesi12g00680 | . | 33 | 189 | LBD gene family | AT1G07900 | 70.06 | 3.92e-76 | 224.0 | |
| Tesi12g01006 | . | 1 | 117 | LBD gene family | AT3G11090 | 71.795 | 3.57e-59 | 180.0 | |
| Tesi13g00063 | . | 3 | 176 | LBD gene family | AT2G40470 | 74.713 | 1.59e-76 | 236.0 | |
| Tesi13g00222 | . | 30 | 189 | LBD gene family | AT1G07900 | 65.455 | 3.32e-72 | 215.0 | |
| Tesi13g00710 | . | 29 | 173 | LBD gene family | AT1G07900 | 60.667 | 6.91e-63 | 191.0 | |
| Tesi13g00858 | . | 39 | 189 | LBD gene family | AT1G07900 | 55.625 | 2.41e-58 | 177.0 | |
| Tesi18g00597 | . | 1 | 263 | LBD gene family | AT3G02550 | 50.151 | 1.76e-92 | 274.0 | |
| Tesi21g00129 | . | 55 | 171 | LBD gene family | AT2G28500 | 52.991 | 4.33e-42 | 138.0 | |
| Tesi21g00130 | . | 55 | 212 | LBD gene family | AT2G28500 | 43.75 | 1.22e-38 | 142.0 | |
| Tesi21g00550 | . | 19 | 186 | LBD gene family | AT2G45410 | 59.218 | 1.26e-68 | 206.0 | |
| Tesi22g00811 | . | 55 | 174 | LBD gene family | AT2G28500 | 52.5 | 8.82e-44 | 143.0 | |
| Tesi23g00696 | . | 1 | 263 | LBD gene family | AT3G02550 | 50.336 | 1.54e-88 | 263.0 | |
| Tesi24g00596 | . | 1 | 82 | LBD gene family | AT2G23660 | 55.172 | 3.06e-23 | 94.7 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Tesi | LOB | 1.6e-35 | No_clan | TF | LOB |