AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00360 ATGGCCTCTCGAATGCCTCCAACTCTCCAGAGATTAGCCATGGCGCCTGTAATTACCTCCCTGAGCTCGCGCAAGGTCGCCGTGATAGGTGCTGGAGCAGCCGGACTGGTCGCGGCTCGAGAGCTGCGCAGAGAAGGCCACAAGGTCGTAGTCTTCGAGCGAGACGACAAGGTCGGAGGCACTTGGATTTATAGCCCTAACGTCGAGTCTGATCAATTGGGTCTCGACCCTTCTCGAACAATTGTCCATTCCAGTCTCTATGACTCTCTTCGCACCAATCTCCCCAGAGAATCCATGGGGTTTCGCGATTACCCCTTTGTGGTTAAAGACGGGAAAGAGAGGGACCCTCGAAGATTTCCGGGTCATCCAGAGGTTTTACTTTATCTGGACGATTTCGCGCGTGATTTCGAACTCACTGAGTTGGTTCGGTTTGGGACTGAGGTTTTTCATGTTGGGTTGGTGGAGGAAGGGAAGTGGCCCAAGTGGGTGGTGAAATCTCGGAGGAGAATTCGAAATGATCAAGAGAGTATACCGATTGATTTGGATGAGGTCTTTGATGGAGTAGTTGTTTGTAATGGGCACTATACGGAGCCGCGTGTTGCAGAAATTCCGGGTATTGATGCCTGGCCCGGGAAGCAAATGCATAGCCATAATTATCGTATTCCTGAGCTATTTCAAGATAAAGTTGTGGCTTTGATAGGGAGTTCTGCTAGTGCTGTTGATATCTCCAGAGACATTGCCAGAGTTGCTAAAGAAGTTCATATTGCATCAAGATCCGTTACGGATGGAACAATGGGAAAGCAGCCTGGCTATAACAATATGTGGCTTCATTCTATGATAGAAAGTGCCCATGAAGATGGTACAGTGATATTTCAAGATGGGAGTTCGGTCCTTGTTGACGTCATTCTACACTGTACAGGATACACGTATCACTTTCCTTTTCTCAAGACCAATGATATTGTGACTGTGGATGACAACCGTGTGGGGCCGCTATACAAGCACGTCTTTCCTCCATTCTTCGCTCCATGGATTTCTTTTATTGGGTTAACCTGGAAGGTCATCCCTTTTCCCATGTTTGAATTACAAAGCAAGTGGGTAGCAGGTGTTCTATCCGGCCGGATTGCACTTCAGTCACAAGACGAGATGCTGGAAGATGTGAAAGCCTTTTACTCGACACTTGATGCTGATGGATTGCCCAAACGATACACTCATAACATGTCAGATTATCAGTTTGAGTACAACGATTGGCTTGCAGCTCAATGCGGGTGTCCGCCCTCAGAGGAGTGGAGAAAGAAGATGTATTATGCAACTGGGAAGAACAGGGTGGCCCGACCAGAGACATATCGCGATGAATGGGAAGATCAACACTTGGTCTTGCAAGCGCAGGAAGACTTTATCCAATACTCCCCAAATGGAGGTAGGTAA 1425 47.93 MASRMPPTLQRLAMAPVITSLSSRKVAVIGAGAAGLVAARELRREGHKVVVFERDDKVGGTWIYSPNVESDQLGLDPSRTIVHSSLYDSLRTNLPRESMGFRDYPFVVKDGKERDPRRFPGHPEVLLYLDDFARDFELTELVRFGTEVFHVGLVEEGKWPKWVVKSRRRIRNDQESIPIDLDEVFDGVVVCNGHYTEPRVAEIPGIDAWPGKQMHSHNYRIPELFQDKVVALIGSSASAVDISRDIARVAKEVHIASRSVTDGTMGKQPGYNNMWLHSMIESAHEDGTVIFQDGSSVLVDVILHCTGYTYHFPFLKTNDIVTVDDNRVGPLYKHVFPPFFAPWISFIGLTWKVIPFPMFELQSKWVAGVLSGRIALQSQDEMLEDVKAFYSTLDADGLPKRYTHNMSDYQFEYNDWLAAQCGCPPSEEWRKKMYYATGKNRVARPETYRDEWEDQHLVLQAQEDFIQYSPNGGR 474
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00360 474 SUPERFAMILY FAD-NAD(P)-binding domain 277 456 IPR036188 -
Tesi1g00360 474 PANTHER DIMETHYLANILINE MONOOXYGENASE 23 455 IPR050346 -
Tesi1g00360 474 Gene3D - 202 305 IPR036188 -
Tesi1g00360 474 PRINTS Flavin-containing monooxygenase (FMO) signature 357 370 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 PRINTS Flavin-containing monooxygenase (FMO) signature 48 72 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 PRINTS Flavin-containing monooxygenase (FMO) signature 292 319 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 PRINTS Flavin-containing monooxygenase (FMO) signature 24 40 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 FunFam Flavin-containing monooxygenase 202 305 - -
Tesi1g00360 474 Gene3D - 25 451 IPR036188 -
Tesi1g00360 474 Pfam Flavin-binding monooxygenase-like 286 422 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 Pfam Flavin-binding monooxygenase-like 24 259 IPR020946 GO:0004499(InterPro)|GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 PIRSF FMO 22 265 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 PIRSF FMO 273 430 IPR000960 GO:0050660(InterPro)|GO:0050661(InterPro)
Tesi1g00360 474 SUPERFAMILY FAD-NAD(P)-binding domain 23 259 IPR036188 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00360 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr18:14839215 Tesi1g00360 Tesi-Chr1:6994376 dispersed
Tesi Tesi-Chr18:14919780 Tesi1g00360 Tesi-Chr1:6994376 dispersed
Tesi Tesi-Chr1:6994376 Tesi18g00227 Tesi-Chr18:14766724 transposed