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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00361 ATGAGTATCGGAGATCTTCTCGACATCCACCCTACAGAACTCAAATTTATTTGTTGTTATCTCCACATTCTGTTGTTCGTTTGGCGTTTGTTTAATCTGGGTAGTAATGTTGTATCTAATCTTTATTTTCATAAACCAAAGTTTAAAACAACCAGCCCGAAGAAATACTGCGTTCATCCCAACAACGGAATTGTTTCACCCTGTATGACATGCGATGTTACAGTTACTATGCAAGCCCAAAAAGAGGCTCCACTTGATTTGCAATGCAAAGACAAGTTCCTCCTTCAGAGCGTTACTGCACCTTCTGGGGCAACTGCGAAGGACATAACACCAGAAATGTTCAACAAGGAGGCTGGAAAGGATGTTGACGAGTTCAAGTTAAGGGTGATTTACATTCCTGCTAATCCCCCCTCACGGGTCAGTGAAGATTCTGAAGAAGTTTCTTCTTCACAGGCTTCTGTGTTAGATAATGAGAACCAAAATGCTGTAAGTGTTTCTTTTAGTTTCTGTTTTCCATTCTGA 522 40.61 MSIGDLLDIHPTELKFICCYLHILLFVWRLFNLGSNVVSNLYFHKPKFKTTSPKKYCVHPNNGIVSPCMTCDVTVTMQAQKEAPLDLQCKDKFLLQSVTAPSGATAKDITPEMFNKEAGKDVDEFKLRVIYIPANPPSRVSEDSEEVSSSQASVLDNENQNAVSVSFSFCFPF 173
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00361 173 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 132 IPR000535 -
Tesi1g00361 173 FunFam Vesicle-associated protein 1-1 1 135 - -
Tesi1g00361 173 SUPERFAMILY PapD-like 6 144 IPR008962 -
Tesi1g00361 173 Gene3D Immunoglobulins 4 135 IPR013783 -
Tesi1g00361 173 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 153 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Tesi1g00361 173 Pfam MSP (Major sperm protein) domain 47 117 IPR000535 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00361 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:7002741 Tesi1g00956 Tesi-Chr1:21879204 dispersed
Tesi Tesi-Chr1:7002741 Tesi1g00362 Tesi-Chr1:7026883 tandem
Tesi Tesi-Chr1:7002741 Tesi1g00955 Tesi-Chr1:21853523 wgd
Tesi Tesi-Chr1:7002741 Tesi21g00613 Tesi-Chr21:12522286 wgd