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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00362 ATGAGTACAGGAGAGCTTCTCAGCATCGAACCTCAAGAGCTCAAATTCCCCTTCGAACTGAGGAAGCAGATCTCATGTTCTCTTCAATTGTTGAATAAGACGGATAGCTATGTAGCTTTCAAGGTGAAGACAACGAATCCTAAGAAGTATTGTGTTCGGCCGAACACTGGAGTTGTCTTGCCTCGGTCCACATGTGATGTTATAGTTACGATGCAAGCACAACGAGAGTCTCCTCCCGACATGCAATGCAAGGACAAGTTCCTCCTTCAGAGCGCAATTGCTAGTCCTGGTGCTACCTCAAAGGATATTAACCCGGAAATGTTCAACAAGGAGTCAGGAAATCTGATTGAAGAGTGCAAATTGAGAGTTGTTTATGTTTCCCCGCCCCAACCACCATCACCAGTCCCAGAAGGATCTGAGGAAGGTTCTTCACCAAGGGCTTCCATATCGGACAACGGGAATTCAAATACTTCTGAGTTTATTGCTGTTTCAAAACCATATGTTGAGCCGCAAGATAAATCTTTAGAGGTGAGATTTTCTCTTGGTTTGCCTATTCAGTTATTGAATTTGAAGCTTTTATAG 582 43.64 MSTGELLSIEPQELKFPFELRKQISCSLQLLNKTDSYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQAQRESPPDMQCKDKFLLQSAIASPGATSKDINPEMFNKESGNLIEECKLRVVYVSPPQPPSPVPEGSEEGSSPRASISDNGNSNTSEFIAVSKPYVEPQDKSLEVRFSLGLPIQLLNLKLL 193
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00362 193 PIRSF VAMP-assoc-prot 1 179 IPR016763 GO:0005789(InterPro)
Tesi1g00362 193 Pfam MSP (Major sperm protein) domain 7 109 IPR000535 -
Tesi1g00362 193 FunFam Vesicle-associated protein 1-1 1 129 - -
Tesi1g00362 193 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Tesi1g00362 193 SUPERFAMILY PapD-like 2 141 IPR008962 -
Tesi1g00362 193 Gene3D Immunoglobulins 2 130 IPR013783 -
Tesi1g00362 193 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 6 153 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Tesi1g00362 193 MobiDBLite consensus disorder prediction 143 158 - -
Tesi1g00362 193 MobiDBLite consensus disorder prediction 127 158 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00362 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr14:37365200 Tesi1g00362 Tesi-Chr1:7026883 dispersed
Tesi Tesi-Chr1:7026883 Tesi21g00617 Tesi-Chr21:12648503 dispersed
Tesi Tesi-Chr1:7002741 Tesi1g00362 Tesi-Chr1:7026883 tandem