AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00370 ATGAAATTCGGGAAGAAATTGAAACACCAAATTCAGGAGACTTTGCCTGAGTGGCAAGACAAGTTCCTATCCTACAAGGATTTGAAGAAGCTCGTCCGGATCATATCTTCTGCTCCGGTGTCGTTACGGTTACGGGGATTGTCCAACTCTGGGAAGGCCCAAGAGGAGTTCGTGTGCTTGTTGGACATGGAGATGGATAAGTTCAATGCCTTCTTCATGGAGCAAGAAGAGGACTTCATAATTCGCCATAAAGAGTTACAACAGAGGATACAGAAGGTGATTGACACATGGGGACCAAATGGAAGTCAGCCTTCGGAGACGGATTATAGAGAGGAGATGGAAAAGATCAGAAAAGAAATTGTCAATTTCCATGGCGAAATGGTGCTGTTAGAGAACTACAGCAATATAAATTACACAGGTTTGGCTAAGATCTTGAAGAAGTATGACAAGCGAACGGGTGGCTTGTTGCGTTTGCCATTCATTCAGAAGGTGCTACAGCAGCCCTTCTTTACAACTGATCTTGTTTCAAAGCTCGTTAAGGAATGTGCAAACACCATTGCTGCAGTGTTCCCAGCTGTGGTGGAAGAAGGGATAAGAGAAGAAAAAGAAAATAGAGAGCCAATAATGGTGGCCGGACGAAGCATTTTCAGGAATACAGTTGCTGCTCTATTGACCATGCAAGAGACTAGAAGAGGGAGCTCTACTTACAGTCACTTTTCTCTTCCTCCTCTGAACTTCCCAGACTCTGATATCATTCAGTCTTTCCAACTTAGCTCTCCCATTCCCATTCTCTAA 795 44.03 MKFGKKLKHQIQETLPEWQDKFLSYKDLKKLVRIISSAPVSLRLRGLSNSGKAQEEFVCLLDMEMDKFNAFFMEQEEDFIIRHKELQQRIQKVIDTWGPNGSQPSETDYREEMEKIRKEIVNFHGEMVLLENYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLQQPFFTTDLVSKLVKECANTIAAVFPAVVEEGIREEKENREPIMVAGRSIFRNTVAALLTMQETRRGSSTYSHFSLPPLNFPDSDIIQSFQLSSPIPIL 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00370 264 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 251 IPR031142 GO:0016036(InterPro)
Tesi1g00370 264 CDD SPX-AtSPX1-like 2 151 - -
Tesi1g00370 264 ProSiteProfiles SPX domain profile. 1 162 IPR004331 -
Tesi1g00370 264 Pfam SPX domain 105 163 IPR004331 -
Tesi1g00370 264 Pfam SPX domain 1 35 IPR004331 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00370 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:7225579 Tesi4g00157 Tesi-Chr4:3760803 dispersed
Tesi Tesi-Chr1:7225579 Tesi21g00625 Tesi-Chr21:12838894 wgd