AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00379 ATGTTTCCGTTATTCAGTTACTTCTCCTTTCTCCTCTTCTTCTTCCTCCATCTTTCTCACCCTTGCTTTCCCGCCAGAACTACTCCCGAAATACCAGACACAGTAACCGTTTTACCTGCCAACGATTTTAACAACACGTGGCATGTTTTCGAGAGGTTTCTCGATACAGGAAAGGGTAGCCATGTAAGTGGCATGTCGGAGCTGAAGAAGTACTTTCATCGTTTCGGCTATCTCCCGATACCCGATACGAATTTCACCGATACGTTTGATGCCCGGTTTGAAGCCGCCGTGATTGGATATCAAACAAAACTCGATCTACCCATAACTGGAAAGCTAGACTCGGACACGGTTTCGCAGATAATATCGCCTAGGTGTGGCGTTCCTGACACGGTGCATAAATTACACACGACACGACACTTCGCGTACTTCTCCGGCCAACCGAGATGGACACGCCAAACTCCGATGACTCTTACTTATGCCTTCTTGCCGGAGAATTCGATCGGGTATTTGAGCTCGTCGGATATAAGGGGTGCCTTTAAACGGGCTTTTGCGAGGTGGGCATCGGTAATTCCGGTGAGTTTCTCGGAGACGGAAGATTACTGGTTTGCGGATGTCAAAATCGGGTTTTACCGGGGAGATCACGGCGACGGAGAACCGTTTGATGGGGTTCTTGGAGTGCTGGCGCACGCTTTCTCTCCGGAGTCCGGGAGGTTTCATCTTGATGCAGCAGAAACGTGGGCCGTTGATTTCGGATCGGAGAAATCGAAGGTGGCCGTTGATTTGGAATCAGTGGCAACGCATGAGATTGGGCATATACTAGGGATGGCCCACACTTCGGTTAAGGAAGCAATCATGTACCCTAGCTTGAGCCCTAGAACGAAGAAGGTGGATTTGAAGCTTGATGATGTAAAAGGGGTGCAAGCTTTGTATGGATCAAACCCTAATTTCAAGTACAGTTCTTTGCTGCAGTCTCAAACTTCTTCAAATCAGGCAGTTGGTTTAAGAGTCAGATATTCTAAGTGGGCTACCTCTCTGGTAGTTTTGATACTGTGTATGTGCATATAA 1065 47.89 MFPLFSYFSFLLFFFLHLSHPCFPARTTPEIPDTVTVLPANDFNNTWHVFERFLDTGKGSHVSGMSELKKYFHRFGYLPIPDTNFTDTFDARFEAAVIGYQTKLDLPITGKLDSDTVSQIISPRCGVPDTVHKLHTTRHFAYFSGQPRWTRQTPMTLTYAFLPENSIGYLSSSDIRGAFKRAFARWASVIPVSFSETEDYWFADVKIGFYRGDHGDGEPFDGVLGVLAHAFSPESGRFHLDAAETWAVDFGSEKSKVAVDLESVATHEIGHILGMAHTSVKEAIMYPSLSPRTKKVDLKLDDVKGVQALYGSNPNFKYSSLLQSQTSSNQAVGLRVRYSKWATSLVVLILCMCI 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00379 354 Pfam Matrixin 149 311 IPR001818 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)|GO:0031012(InterPro)
Tesi1g00379 354 SUPERFAMILY Metalloproteases (zincins), catalytic domain 142 314 - -
Tesi1g00379 354 FunFam Metalloendoproteinase 1 55 316 - -
Tesi1g00379 354 PANTHER MATRIX METALLOPROTEINASE 12 325 - GO:0004222(PANTHER)|GO:0030198(PANTHER)|GO:0030574(PANTHER)
Tesi1g00379 354 Pfam Putative peptidoglycan binding domain 65 119 IPR002477 -
Tesi1g00379 354 CDD ZnMc-MMP 148 311 IPR033739 GO:0008237(InterPro)|GO:0008270(InterPro)
Tesi1g00379 354 Gene3D Collagenase (Catalytic Domain) 54 317 IPR024079 GO:0008237(InterPro)
Tesi1g00379 354 SUPERFAMILY PGBD-like 57 130 IPR036365 -
Tesi1g00379 354 SMART col-5 145 312 IPR006026 GO:0006508(InterPro)|GO:0008237(InterPro)|GO:0008270(InterPro)
Tesi1g00379 354 PRINTS Matrixin signature 120 133 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Tesi1g00379 354 PRINTS Matrixin signature 264 289 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Tesi1g00379 354 PRINTS Matrixin signature 179 194 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Tesi1g00379 354 PRINTS Matrixin signature 203 231 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
Tesi1g00379 354 PRINTS Matrixin signature 298 311 IPR021190 GO:0004222(InterPro)|GO:0006508(InterPro)|GO:0008270(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00379 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr18:29117629 Tesi1g00379 Tesi-Chr1:7497173 dispersed
Tesi Tesi-Chr1:7497173 Tesi4g01179 Tesi-Chr4:47254508 dispersed
Tesi Tesi-Chr1:7497173 Tesi21g00642 Tesi-Chr21:13325257 wgd