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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00405 ATGGGAAAGGAATCCGGAAGGAAGTGTTCTCACTGTGGCAATAATGGGCATAACTCAAGAACATGCAATGAGAAAGCTGGTTTGAAGCTCTTTGGTGTGAGAATTTTGAAGGAAAAAGGTAATGAATCGATCAAAAAGAGCTTAAGTACTGGAAATTTGCCATCACGAGCTGTCGAACATTGCTCTGGCGATCCTGGGTATCTCTCTGATGGGCTCATTCAATCCAGAAGAGACGCACAAGAGAGGAAGAAAGGAATACAATGGACAGAGGAAGAACACCGAAGTTTCTTAGCAGGACTAGAGGAGCTAGGGAAAGGGGACTGGAGAGGAATTTCAAGGAAATTTGTGACCACTAGGACTCCAACCCAGGTGGCTAGCCATGCTCAGAAGTACTTTCTCCGGCAGTCTACCTCGATTAGGAACAAATGCAGATCAAGTCTCTTCGATGTTGCCTTAAAAAAACCAGCTTCAAACCCTCGAATTGCTCCTGCATTACCTCTGAAGAGAACAATTGAATTTTCCGGGCAGGTCGGTACCTCAGCGCAGATTGCAGCCCGCAGCTTGGAAGCTCCCCAAGTTTTACCAATAGCAGCAACTTGTGGCATTTCCAATTTTCACGGGTTTCCATACATGGTTGGAATCTCCGGTGGGCCGCTAAACTATCCGGCAGCTAAAATCTACCCAACTGTATCATTTGTCCCAGTGATGAATTTTCCGAACCGGGGTTACATTTTTCTACCCAAGACTCAGAATAATTTTGCTCCTTGTGCACCCATTACTTCCCAATCATCCAGCAATACGTCGCCACAATCAGTCCCACATGGTTCATCTCAGGCAGACCCTGGGACTTCGTCCACTGTAAACACTGAGCTGGAGCTTCGTACAGCAGCACCTCAAACTCTGGATCAGACCAAGTTGACCTCTCAGACATCGAATTTCAGTGGGGCCATTAGAGTTATCTGA 963 46.52 MGKESGRKCSHCGNNGHNSRTCNEKAGLKLFGVRILKEKGNESIKKSLSTGNLPSRAVEHCSGDPGYLSDGLIQSRRDAQERKKGIQWTEEEHRSFLAGLEELGKGDWRGISRKFVTTRTPTQVASHAQKYFLRQSTSIRNKCRSSLFDVALKKPASNPRIAPALPLKRTIEFSGQVGTSAQIAARSLEAPQVLPIAATCGISNFHGFPYMVGISGGPLNYPAAKIYPTVSFVPVMNFPNRGYIFLPKTQNNFAPCAPITSQSSSNTSPQSVPHGSSQADPGTSSTVNTELELRTAAPQTLDQTKLTSQTSNFSGAIRVI 320
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00405 320 CDD SANT 88 132 IPR001005 -
Tesi1g00405 320 Gene3D - 86 137 - -
Tesi1g00405 320 FunFam transcription factor MYB1R1 86 137 - -
Tesi1g00405 320 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 135 IPR006447 GO:0003677(InterPro)
Tesi1g00405 320 ProSiteProfiles Zinc finger CCHC-type profile. 7 24 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Tesi1g00405 320 SMART sant 84 134 IPR001005 -
Tesi1g00405 320 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Tesi1g00405 320 Pfam Myb-like DNA-binding domain 88 132 IPR001005 -
Tesi1g00405 320 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Tesi1g00405 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 136 IPR017930 -
Tesi1g00405 320 PANTHER TRANSCRIPTION FACTOR KUA1 6 258 IPR052245 GO:0009723(PANTHER)|GO:0009739(PANTHER)
Tesi1g00405 320 MobiDBLite consensus disorder prediction 257 287 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00405 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:8083313 Tesi4g01194 Tesi-Chr4:47518189 dispersed
Tesi Tesi-Chr1:8083313 Tesi1g00882 Tesi-Chr1:19878059 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi Myb_DNA-binding 1e-10 CL0123 TF MYB-related