AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00795 ATGGCTAAAGTGCGCCAACACCGTAGGTATCACTGTACTGGAGGGGGTCGCCGGCGACGGAATTGCGGCAACGGCCACTTTGAAAATGCCTTCCAAATTGTGGTTACCCTTCTGGCACTGAAGTACCAAGTAGGCAAGATTAAGAATCCCTTTGAGACTCGTCCCTTGTTTATGAATTTTGCCATTCTTTCCATGCTCATCTCCTTTCTATCCCCTCCAAAGAAACTCCCTTTCATTTCAGTCCATATGGCACGTATCGTCGGCGAAACCCAACTTCTCCTGAGGGATCTGGCTTTGTCTATGTTTAGCTCACTTCTTCTGTCACAAAACCTCTCATGCCCTGCCTTCCTCTTATGCATTCCCTCTTTGTACGCTCTACTCAAACCCTGCTATAGGTGGCTTCACAAGACGGAAGCCATGCAGTACGTGCTCTCTAAGCTTGGCCTTACTGATGACAAAACATCCCACGAGGACCCAGAGCGATCCACCGACTCGGTTACTGTTGAATTCCCAAATGTGGACACTGCAAGTTCAACATTACCGGAGATCGGTCCTCTCGATCGGAAGAGGATCAATGATGCCTTAGATAAGCACCTCGAGAAATCGTCGCCGTCGACGTCTAAGAGATTGAACGGCAAGGAGAAGGGAAGATTATCCGTTCCATCCACCTCCATCGGCAAGCCACCACCGGATCACCGGGACACTCGTTCAGCTTCTCTCTCCAAGAACAAATGCTCGGAAGAGGAGTCTGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCAGATGGGGATGACACATCTTGGATCTCATGGTTTTGCAATCTGCGAGGGAATGAATTCTTCTGCGAAGTTGATGATGAGTACATTCAAGATGATTTTAACCTTTGCGGGTTAAGCAGTCAAGTTCCTTACTATGATTATGCACTCGATTTGATTTTGGATGTTGAATCCTCTCACGGTGATATGTTCACTGAGGAACAAAATGAATTGGTCGAATCGGCAGCAGAGATGCTGTATGGTCTGATTCATGTCCGTTACATACTAACTAGCAAAGGAATGTCCGCAATGGTTGCTTGGAAGGTGTTCTTAGGAAGGGCACAGGGATCCGATTGTCATGCATCTTCAGTATGTGATGACACTTTGGTGTTTGTGGATGGTTCAATGGAGCAGGTTGTGAATTTTAGAGCAGTATTGATATGTTTTGAGGCGGTGTCGGGCCTTCGTGTAAACTTGTCAAAGTACCATTGTCAGAGGGCGTTAGATGCAGAGCGATATCTTAGCTTGTTGTGCCTAGGTTCTGAGTAG 1308 46.94 MAKVRQHRRYHCTGGGRRRRNCGNGHFENAFQIVVTLLALKYQVGKIKNPFETRPLFMNFAILSMLISFLSPPKKLPFISVHMARIVGETQLLLRDLALSMFSSLLLSQNLSCPAFLLCIPSLYALLKPCYRWLHKTEAMQYVLSKLGLTDDKTSHEDPERSTDSVTVEFPNVDTASSTLPEIGPLDRKRINDALDKHLEKSSPSTSKRLNGKEKGRLSVPSTSIGKPPPDHRDTRSASLSKNKCSEEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMVAWKVFLGRAQGSDCHASSVCDDTLVFVDGSMEQVVNFRAVLICFEAVSGLRVNLSKYHCQRALDAERYLSLLCLGSE 435
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00795 435 MobiDBLite consensus disorder prediction 151 264 - -
Tesi1g00795 435 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 262 361 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 SUPERFAMILY Casein kinase II beta subunit 266 358 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 Pfam Casein kinase II regulatory subunit 268 359 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 PRINTS Casein kinase II regulatory subunit family signature 340 361 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 PRINTS Casein kinase II regulatory subunit family signature 268 284 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 PRINTS Casein kinase II regulatory subunit family signature 285 299 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 PANTHER CASEIN KINASE II SUBUNIT BETA 248 358 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Tesi1g00795 435 SMART CK-II-beta-2 268 396 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi1g00795 435 FunFam Casein kinase II subunit beta 261 362 - -
Tesi1g00795 435 MobiDBLite consensus disorder prediction 165 179 - -
Tesi1g00795 435 MobiDBLite consensus disorder prediction 186 215 - -
Tesi1g00795 435 MobiDBLite consensus disorder prediction 229 249 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00795 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:17546232 Tesi21g00747 Tesi-Chr21:16658027 dispersed
Tesi Tesi-Chr1:17546232 Tesi1g00796 Tesi-Chr1:17588166 tandem
Tesi Tesi-Chr1:17546232 Tesi22g00239 Tesi-Chr22:19544013 wgd