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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00875 ATGGACACGTCTTCTTCTTCGTCAATCGCCCAAGGTCCTGACAACGATACCCCTGAGCCAGGGCAGCAGTTCTCTCAATTTGGTGCCGGATGCTTCTGGGGCGTCGAATTAGCGTTCCATAGAGTTCCGGGAGTTACGAAGACTGAAGTTGGGTACAGTCAAGGGTTTTCGCATAATCCAACCTACAAAGATGTTTGTTCGGGCAAGACGAATCATTCCGAGATTGTTAGGGTTCAGTACGATCCGAAGCAGTGCAGCTATGAGAATTTGCTTGATGAGTTCTGGGCTCGGCATGATCCTACTACGCTTAATCGTCAGGGAAATGATGTGGGTACGCAGTACAGATCAGGAATGTACTTCTACACACCTGAGCAGGAGAAAGCAGCACAGGAGTCTATGGAACAACATCAGAAGCTCGTGACCAGGAAGAAGATCGTTACTGAGATTCTGCCTGCGAAGAAATTCTACAGAGGGGAGGAATACCACCAGCTATACCTTGCAAAAGGGGACCGATCTGGTTTGAAGCAGTCAACTGATAAAGGCTGCAACGATCCGATCCGATGCTATGGCTAA 573 48.69 MDTSSSSSIAQGPDNDTPEPGQQFSQFGAGCFWGVELAFHRVPGVTKTEVGYSQGFSHNPTYKDVCSGKTNHSEIVRVQYDPKQCSYENLLDEFWARHDPTTLNRQGNDVGTQYRSGMYFYTPEQEKAAQESMEQHQKLVTRKKIVTEILPAKKFYRGEEYHQLYLAKGDRSGLKQSTDKGCNDPIRCYG 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00875 190 Gene3D Peptide methionine sulphoxide reductase MsrA 7 190 IPR036509 GO:0008113(InterPro)
Tesi1g00875 190 FunFam Peptide methionine sulfoxide reductase 12 190 - -
Tesi1g00875 190 Pfam Peptide methionine sulfoxide reductase 27 169 IPR002569 GO:0008113(InterPro)
Tesi1g00875 190 NCBIfam peptide-methionine (S)-S-oxide reductase MsrA 26 169 IPR002569 GO:0008113(InterPro)
Tesi1g00875 190 SUPERFAMILY Peptide methionine sulfoxide reductase 19 171 IPR036509 GO:0008113(InterPro)
Tesi1g00875 190 MobiDBLite consensus disorder prediction 1 23 - -
Tesi1g00875 190 Hamap Peptide methionine sulfoxide reductase MsrA [msrA]. 22 180 IPR002569 GO:0008113(InterPro)
Tesi1g00875 190 PANTHER MITOCHONDRIAL PEPTIDE METHIONINE SULFOXIDE REDUCTASE 7 188 IPR050162 GO:0005737(PANTHER)|GO:0008113(PANTHER)|GO:0034599(PANTHER)|GO:0036456(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00875 K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr18:33159784 Tesi1g00875 Tesi-Chr1:19629032 dispersed
Tesi Tesi-Chr1:8312628 Tesi1g00875 Tesi-Chr1:19629032 wgd
Tesi Tesi-Chr1:19629032 Tesi21g00729 Tesi-Chr21:16037756 wgd