AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00915 ATGGAGCAAGAAGAACCCTCTGGCACTGCAACTCCTGCTAGGAGGAAGGTCAGGTTTGCACCAAAAGTCCCTCCACGCAGAACACCCAAACCCACAGATACCAAAACTGAGGTGGTTGAGGATGAAGAAGCTGCTCAGACCAGAGAGTTGCTGCGGCGTGTTAATGAGAATTCCAGGAGACGAGGGGCTCTCAAAAGCAAATCGACAGTGCAAGTTGCATTTGGTTATACAGGTACATCAACTACCATTAGGACATATGGTGTCCCGGATAATGGGAGTGGTAGTAGCAGTAGGGGCTCGGTACCTCATGGTCCTACTTCTGATAAAGAAATTCTCTCTTCTTCGTCTCTGAATTCAACGACCCAGCCAAATGGCGCCAATGCATATTCTGAAGATCCTGCCGATACACCAACTCAGAAACTGAAGAAAGAATACAGAGAACCCTGGGATTATTACTCATATTATCCTGTTACCCTTCCTCTGAGGAGGCCATACTCAGGAGACCCAGAACTTCTTGACGGGAAGGAATTTGGGGAGGCTTCAGCAAACTCGGATTATGATGAGAATTCTATAAATCCAGCTTCAGAGCTTGGGCTAATGGAGGAAAGTGAAGAAGCAAGGATGTTTTTTCTTCAGCTACCTGCTTCTCTACCTTCAGTCAAGCAACCGACTAGTGCAAAGGGGAAAAATATAGCTGTAAACTCAAAACCATCCAGGGGTTTGGATGGTGATGAGAAATGCTGCAGTTTGGAAGAGTTACCAGCAGGCTTTATGGGAAAAATGATGGTGTACAAGAGCGGTGCCATCAAGTTGAAGCTTGGAGAGACCCTTTATGATGTTTCCCCTGGTTCAGATTGTATGTTTGCCCAGGATGTTGCAGCAATAAACACCAAAGATAAAAGCTGTTGCATACTTGGGGAGCTTAACAAGCGTGCCGTTGTAACCCCCAATGTCGATTCCCTCTTGAATACTGTAATTGACTTGGATTAA 990 45.86 MEQEEPSGTATPARRKVRFAPKVPPRRTPKPTDTKTEVVEDEEAAQTRELLRRVNENSRRRGALKSKSTVQVAFGYTGTSTTIRTYGVPDNGSGSSSRGSVPHGPTSDKEILSSSSLNSTTQPNGANAYSEDPADTPTQKLKKEYREPWDYYSYYPVTLPLRRPYSGDPELLDGKEFGEASANSDYDENSINPASELGLMEESEEARMFFLQLPASLPSVKQPTSAKGKNIAVNSKPSRGLDGDEKCCSLEELPAGFMGKMMVYKSGAIKLKLGETLYDVSPGSDCMFAQDVAAINTKDKSCCILGELNKRAVVTPNVDSLLNTVIDLD 329
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00915 329 MobiDBLite consensus disorder prediction 70 134 - -
Tesi1g00915 329 MobiDBLite consensus disorder prediction 28 63 - -
Tesi1g00915 329 PANTHER DNA-DIRECTED RNA POLYMERASE III 5 325 IPR007811 GO:0003677(InterPro)|GO:0005666(InterPro)|GO:0005666(PANTHER)|GO:0006383(InterPro)|GO:0042797(PANTHER)
Tesi1g00915 329 MobiDBLite consensus disorder prediction 1 142 - -
Tesi1g00915 329 Pfam RNA polymerase III RPC4 206 318 IPR007811 GO:0003677(InterPro)|GO:0005666(InterPro)|GO:0006383(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00915 K03026 DNA-directed RNA polymerase III subunit RPC4
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:20833475 Tesi4g00005 Tesi-Chr4:116308 dispersed