AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00927 ATGGATGAGGTTTCACAGTTGTTGAGTTCTTTTGGGTCTGTAACGAGGGTTGGTGGTTGGTTCAAGGGTTTCTGCAAACCCCTTTTCAAACCCTCCGAATCTTCAGTTGTTTCTCGTAGTTCAGAGCATCTGAAAATGGCGTTTTCTGGACAAACTCCTGATATTTTGGGCGATCGCCAGTCCGGACAGGACGTTCGAACCCAGAATGTTGTGGCTTGTCAAGCTGTCGCAAACATTGTGAAATCGTCGCTCGGCCCTGTTGGATTGGACAAGATGCTGGTCGATGATATTGGTGATGTAACAATTACCAATGACGGTGCTACAATACTCAAGATGTTAGAAGTTGAACATCCAGCTGCCAAGGTACTTGTGGAGTTAGCTGAGCTTCAAGATCGAGAAGTTGGAGATGGAACGACTTCAGTGGTCATTGTAGCTGCGGAGTTGCTTAAGAGAGCAAATGATCTAGTGAGAAATAAGATTCACCCAACATCTATAATCAGTGGATACAGGCTCGCAATGAGGGAAGCATGCAAATACGTTGATGAAAAACTTGCTGTGAAGGTTGAAAAGCTTGGAAAAGATTCCCTTGTAAATTGTGCCAAGACAAGCATGTCCTCTAAGTTGATAGCTAGCGACGATGACTTCTTTGCGAATTTGGTTGTAGATGCAGTTCAAGCAGTAAAGACAACCAATGCACGGGGGGAGATTAAGTACCCAATCAAGGGCATAAATATTCTGAAAGCCCATGGCAAAAGTGCAAGAGAGAGCTACTTGCTGAATGGCTATGCTCTGAATACAGGCCGTGCTGCCCAAGGAATGCCCACCAGAGTTGCTCCTGCAAGGATTGCCTGCCTTGATTTTAATCTTCAGAAAACTAAAATGCAAATGGGTGTCCAAGTCTTGGTCAGTGATCCTAGGGAGCTTGAAAGAATTCGTCAAAGAGAAGCGGACATGACGAAAGAGCGTATTGAAAAGCTTCTGAAAGCAGGAGCCAATGTTGTCCTAACAACAAAAGGGATTGACGATATGGCACTCAAGGCAAGCTTCTTTTACTTTGTGGAGGCTGGAGCCATTGCTGTAAGGCGTGTGCGGAAAGAGGATTTGCGCCATGTTGCCAAGGCGACTGGTGCGACTGCGGTTTCAACATTTGCTGATATGGAAGGAGAGGAAACATTTGATTCGTCGTTTCTTGGATATGCAGATGAAGTCGTGGAGGAGCGCATTTCTGATGACGATGTGATTCTGATTAAAGGGACTAAAACTTCAAGTGCGGTCTCCTTAATCCTCAGAGGTGCAAATGACTATATGCTTGATGAGATGGAGAGATCTTTGCATGATGCTCTGTGCATTGTCAAGAGGACCCTTGAATCCAATGCGGTGGTTGCTGGTGGTGGTGCAGTTGAGTCTGCTTTATCCGTCTACTTGGAATATCTGGCAACGACTTTGGGATCCCGAGAGCAGTTGGCGATTGCAGAATTTGCTGAATCACTATTAATTATACCAAAGGTGCTTGCTGTCAATGCTGCAAAGGATGTGACTGATTTGGTTGCAAAACTTCGGGCTTACCACCACACTGCACAAACCAAGGCAGATAAGCAGCATCTATCGAGCATGGGACTAGACCTTTCAAAGGGAACCATCCGCAACAACTTAGAAGCTGGAGTCATTGAGCCTGCGATGAGCAAAGTGAAGATAATACAGTTTGCAACCGAGGCAGCTATAACTATTCTCCGGATTGACGACATGATCAAACTCGTCAAAGATGAAAGTCAGAACGAACAGGACTAG 1788 45.41 MDEVSQLLSSFGSVTRVGGWFKGFCKPLFKPSESSVVSRSSEHLKMAFSGQTPDILGDRQSGQDVRTQNVVACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVDEKLAVKVEKLGKDSLVNCAKTSMSSKLIASDDDFFANLVVDAVQAVKTTNARGEIKYPIKGINILKAHGKSARESYLLNGYALNTGRAAQGMPTRVAPARIACLDFNLQKTKMQMGVQVLVSDPRELERIRQREADMTKERIEKLLKAGANVVLTTKGIDDMALKASFFYFVEAGAIAVRRVRKEDLRHVAKATGATAVSTFADMEGEETFDSSFLGYADEVVEERISDDDVILIKGTKTSSAVSLILRGANDYMLDEMERSLHDALCIVKRTLESNAVVAGGGAVESALSVYLEYLATTLGSREQLAIAEFAESLLIIPKVLAVNAAKDVTDLVAKLRAYHHTAQTKADKQHLSSMGLDLSKGTIRNNLEAGVIEPAMSKVKIIQFATEAAITILRIDDMIKLVKDESQNEQD 595
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00927 595 FunFam T-complex protein 1 subunit alpha 260 422 - -
Tesi1g00927 595 PANTHER CHAPERONIN 58 585 IPR017998 GO:0005832(PANTHER)|GO:0006457(PANTHER)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Tesi1g00927 595 ProSitePatterns Chaperonins TCP-1 signature 2. 102 118 IPR002194 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Tesi1g00927 595 NCBIfam thermosome subunit beta 58 583 IPR053374 -
Tesi1g00927 595 Gene3D GroEL 260 422 IPR027409 -
Tesi1g00927 595 SUPERFAMILY GroEL apical domain-like 255 431 IPR027409 -
Tesi1g00927 595 ProSitePatterns Chaperonins TCP-1 signature 1. 81 93 IPR002194 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Tesi1g00927 595 Gene3D - 73 584 IPR027413 -
Tesi1g00927 595 NCBIfam thermosome subunit alpha 58 583 IPR054827 -
Tesi1g00927 595 Pfam TCP-1-cpn60 chaperonin family 76 585 IPR002423 GO:0005524(InterPro)
Tesi1g00927 595 ProSitePatterns Chaperonins TCP-1 signature 3. 130 138 IPR002194 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Tesi1g00927 595 FunFam Uncharacterized protein 73 185 - -
Tesi1g00927 595 Gene3D - 185 458 IPR027410 -
Tesi1g00927 595 NCBIfam T-complex protein 1 subunit alpha 55 591 IPR012715 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Tesi1g00927 595 SUPERFAMILY GroEL equatorial domain-like 58 584 IPR027413 -
Tesi1g00927 595 SUPERFAMILY GroEL-intermediate domain like 192 458 IPR027410 -
Tesi1g00927 595 CDD TCP1-alpha 57 587 IPR012715 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)
Tesi1g00927 595 PRINTS Tailless complex polypeptide 1 (chaperone) signature 130 149 IPR017998 GO:0140662(InterPro)
Tesi1g00927 595 PRINTS Tailless complex polypeptide 1 (chaperone) signature 100 118 IPR017998 GO:0140662(InterPro)
Tesi1g00927 595 PRINTS Tailless complex polypeptide 1 (chaperone) signature 426 448 IPR017998 GO:0140662(InterPro)
Tesi1g00927 595 PRINTS Tailless complex polypeptide 1 (chaperone) signature 460 472 IPR017998 GO:0140662(InterPro)
Tesi1g00927 595 PRINTS Tailless complex polypeptide 1 (chaperone) signature 78 94 IPR017998 GO:0140662(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00927 K09493 T-complex protein 1 subunit alpha
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:21174713 Tesi24g00873 Tesi-Chr24:29066899 dispersed
Tesi Tesi-Chr18:23690456 Tesi1g00927 Tesi-Chr1:21174713 transposed
Tesi Tesi-Chr1:21174713 Tesi21g00642 Tesi-Chr21:13325257 wgd