AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00930 ATGCTTCCTTTCTCCTTAACCGTTTCGAACCAGATTCGGTTCTTGCTTCAGAGCTTGAACGATTCGAACTCCGACTCTGTCATTCGCGAGCTCTTTCAGTTTGTTGAATATGGAAGTGAGGGAAGCATTTCGCTCCTCCAAACCTGCTTGGATCACATGCATTTTAATGGGATGGACATACAGAGCATGCAACTGGATCCAGATTTTCTAGCTGCACTCTTTAGATATTTATTGGATAGACCGAATTTCAGCACAGTGTTTTGTGAAGCACTAAAAAGTGTGACGATCAATGAAGGATATCTTGGAGATTTCTGTAATGCCTTACACTTGTCAGTGTCTGAGAAAATCAGCATTGGTCTTGCTTTGTCGGATTCAGAAGATCTTGACATCAGAATGAGTGGGCAAAACTTCTGCATGGCCCAGATTGAGGAATTGTGTGCCAATCCCGCTTCTATTGATTCCCATGAGCAAATTCAGAATATAGTGATGTTCCTCCATCGGTCTGAGGGCCTTGCCAAGCATGTGGATTCCTTCATGCAAATGCTATCTTTATTGCAACTGAAAGATAGGACCCCATTTTTATTAGCTCCATTGTTTCCAGATGATTTATGTCAGGCCAATGTTGTGAGGAATCTGGATGTATTCTATGAATGCAGCGAATTTGATTTTGATGCCGTTCTCGCAGAGATGGAGAAGGAAATGAGCATGGCTGATATTATGAAGGAACTGGGATATGGATGCACAGTTAATGTTTCACATTGCAAAGAGATACTATCCCTTTTCTTACCTCTGACTGAAGTCACTATCTCTAGGATACTTAGCACAATAGCTCGCACCCAAGCTGGTCTTGAGGATGGTCACAACACATATTCAACATTCTGCTCTGCTCTTGGTAGCAACTCATCATCTGATTCATCATGGATGAGCTCCTGGAATGTTGATGTCCTCGTGGATTCAATTAAGCAACTTGCTCCTGGAACTGATTGGGTACATGTTATGGAAAACCTAGATCACGAGGGGTTTTACTTTCCGAATGAGGGGGCATTTTATTTTTTCATGTCTATTTATGCACATGCATGCAAGGATCAATTCCCACTCCATGCTATTTGTGGGTCTGTCTGGAATAATGCTGAGGGCCAGCTATCCTTTTTAAGATATGCTGTGTCAGCACCACCAGAAATGTTTACCTTTGCGCATTGTGTGAAGCAACTGGCATATGTTGATACAGTTCATGGTCATAAGCTTCCACATGGACATGCAAATCACACATGGTTTTGCCTTGACCTTTTGGAGGTGTTGTGTCAACTAGCTGAGAGGGGCCATGCTGGCTCTGTTCGATCTATAATTGAGTATCCTCTTAAACACTGTCCTGAAGTCTTGCTTCTTGGGATGGCACACATTAATACTGCATTTAACTTCATCCTACATGAAGTGTCTTCTGCTGTTTTTCCCACAATAGCTGGAAATTCCATGAGAAGTGGTATAATTCTTCACCTCTGGCATGTTAATCCTAACGTTGTGTTGTGGGGATTTGTAGACATTCACAGCACCGATCCAGACAATATGACTAGAATTTTGGGCATTTGCCAAGAGCTAAAGATTCTATCATCGGTTTTGGAGATGACTCCTTTTTCTTTCAGTATTAGATTGGCTGCCCTTGCTTCTCGGAACGAACAAATAAATCTTGATAAATGGTTGAATGAGAATCTAAGCACATATAAAGATGTTTTCTTTGAGGAGTGCCTCAAGTTTTTGAAGGAGATATCCTTCGATGCAGCACAGGATGTTTCTGCCAATCCCTTTCAACATTCTGATGCTGTTTCCAATGTTTATTGGGAGACAAGTTCAATTCTTTTGAAGGTCCTTCAGGCACATGCTGGTCAGATTACCTCTCGCCGGCTTTCTGAGGAAATGGCAAGGTTGAACGTAGCATCCACGCATGCTAATCCGAGACTGCAGAATGGTGGGGATACAGATTCATCAACATCTGACAGATATGCAGATGACATTGAGGCAGAAGCAAACTCTTACTTTGATCAAATATTTAACGGTCAGTTGACCATGGATGCAATGGTTCAAATGCTTGCGCGTTTCAAGGAATCTTCTGGAAAAAGGGAACAATCGATATTTGAGTGTATGATTGCGAACCTATTTGAAGAGTACAAGTTCTTCCCTAAATATCCTGAAAAGCAACTCAAAATTGTTGCAATTCTCTTTGGCTCCCTAATAAAGCATCAGCTTGTAACCCATCTCACTCTCGGTATTGCCCTGCGTGGTGTTTTGGATGCATTGCGGAAATCTGCAGATTCAAAAATGTTTGCATTTGGTGCCAAGGCTTTGGAGCAGTTCGTGGACCGCTTGGTAGAGTGGCCACAATATTGTAATCATATCTTGCAAATATCTCACCTACGCAGTACTCATTCAGAGCTTGTTGCATTCATCGAACGTGCTCTTGCTAGGATTTCATCAGGTCACTCAGATGCAAATGGAAGCAACAGTGCTTCTAGTGATCAGTATCATGGTTCTACTCAGGCTACCTCGGACAATGTGGAGGCACCTGAATCCTCATGGCAGTTAATTGGATCTAGCACCACACAACCTGGGCAGCAACTCTCTTCTCCTTTCCAGCTGCAACAGAGACATCAAGGTTTTCTGGATGACAGGCATAAAGCCTCTGCAACTTCACTTAGCTCCATGAAACCACTTTTATCTCCTGCTGGGCAACCTTCAGTTGTTACTGCGCATGATGCAACTACTTCACAGTCCTTGCAAACAGTGGCATCACAGAATGCATCCATTGCTTCAGCAACCATGTCTTCTCCTGGTTTTCTTCGCCCTTCCCGAGGAATAACCTCCACAAGCATGGTTAAACAACATTCATATAACACAGGGTTTGGTTCTGCGTTGAACATCGAAACACTTCTTGTGGCTGCTGAGAGAAGGGATAATCTCATAGAGGCTCCTGCATCTGAAACTCAGGACAAGATATTATTTATGATTAATAATATTTCTGCCGCAAATATTGAAGCAAAAGCAAAAGAATTTACTGAGATCCTGAAAGAGCAGTACTATCCATGGTTTGCACAGTATATGGTGATGAAAAGAGCAAGCATTGAGCCAAATTTTCATGACTTGTACTTGAAATTTTTGGATAAAGTTAACTCAAAAGCATTGAATAAGGAGATTGCCAAAGCTACTTATGAGAACTGCAAGGTTCTTTTAGGATCAGAGCTTATTAAATCAATTTCAGAAGAACGTTCTTTGCTTAAAAATCTAGGTAGCTGGCTTGGGAAATTTACTATTGGCAGAAATCAAGTGTTAAGGGCTCGAGAAATAGATCCCAAAGTTCTGATAATAGAGGCATATGAGAAAGGATTGATGATTGCTGTAATTCCATTTACCTCGAAGATTCTTGAACCATGCCATAACAGTATAGCATATCAGCCTCCCAATCCTTGGACTATGGGCATTCTTGGTTTACTTTCTGAGATTTATGCACTGCCAAATCTAAAAATGAACCTCAAGTTTGACATTGAGGTACTATTCAAGAACCTTGGTGTGGATATGAAAGATGTAAAACCGACATCTCTTCTCAAAGATAGGGTGCGAGAAGTAGAAGGAAATCCTGATTTTTCCAACAAAGATGTTGGGGCATCCCAGCCACAAATGCTTGCTGAAGTCAACTCGGGAATGATATCTACATTGAATCAAGTTGAGCTACGGCCCGAGGTTTCCAATCCAGCTCACCTTGGTGGACATTCAAATGTATTATCTCAGTATACTGGTGCTTCTCCTCATCTTGCTTCTGATCCATTGATGGAGGATGAAAAAATGGCAAGCTTAAGCTTATCTGACCGGCTTCCTTCTGGTCAAGGACTGTCACAAGTTACTCCATCCCAGTCACTGTATTCTGTTAGTCAGCTTCCTACATCAATCCCTAATATTAGAACTCACGTTATTGTCAACCAAAAGCTAAGTGCTTTAGGCCTGCACTTGCATTTTCAGAGGTTTGCAATCGCTAATATAATCATTTCCTATAGTTTGCCAAGTAATCTGACCATCTCTTCTTCGAAAGATCGTAATTCAGTTATATGCAACAGAGTTGTTCCAGTGGCCATGGAGAGGGCTATTGATGAGATTAGGATCCCTGTTGTTGAACGCAGTGTTACTATCGCAATTCAGACAACAAAAGAACTTGTTTTAAAGGACTACGCCATGGAGACAGATGAGACCCGCATATGTAATGCTGCACACTTGATGGTGGCAAGTCTCGCAGGAAGTCTAGCTCATGTCACATGCAAGGAACCCCTTCGTGGTTCCATATCAAGTCAACTGAGGAATTCGCTTCAGGGTATAACTATTGCAAGTGAACTTCTAGAACAAGCTGTGCAACTTGTTACGAATGATAACCTTGATCTGGGTTGTGCAGTTATTGAACAAGCTGCAACGGAGAAGGCATTGAAAAGTATTGATGGGGAAATAGCTCAACGACTTTCTTTAAGAAGGAAGCATAGAGAGGGTGTTGGTTCTGCATATTTTGATGCGAGTACATATGCTCAAGGTCCTATGGGTGTGGTACCAGAGGCCCTCCGCCCCAAACCCGGACGCTTGTCTCTTTCTCAACAGCGAGTTTATGAGGATTTTGTTCGATTTCCCTGGCAAAATCAACCAAGCCAGAGCTCAAATTCTGTGCCTCCTGGTCCGCCTGCTTCATCTGGTGGTTCTGCGAGTTCTGGCTTGTCTCGTGCCTATGGTTCAACATCAGGACACCTCAACCCAGGCGTCTTCTCGTCTGGACAAGGGAGCCCAGCATTCAGTACAGTTGCTCAGCCCTTGGATCTCATTTCTGAAGAGATGGACCCTAGTGCTTCCTCAACTCATATTGGGGCGACAGATGGTGTTATGCAGCATGTTTCTGAAATCAATTCTGTTGTTGATTTATTTCCTTCAACTACTGCAGCCGTCCCTGAATTGCTTTTAGTGGAACCATCTAGTGCTGAATTGGGCACTACTGCACATCCATTACATGCAACATCTGTCACAGAGAGCCTTGCAAGTGGCATCTCAGAACCTTTGTTGACAACGGGGGAAGGGTTGGATAAGTACCAGATTGTTGCACAGAAGTTGGAAACTTTGGTAACTAAAGTCGCTAGAGATGCAGAAGTTCAGGAAGTTATTGCCGAGGTTCCTGAAATTATACTCAGATGTATAAGCCGAGATGAGGCTGCCTTGGCTGTTGCGCAGAAGGTTTTTAAGAGTTTATATGAGAATGCATCAAACGATTTACATGTTGATGCTCATCTTGCAATTCTGGATGCTATTCGAGATGTTTGCAAGCTTGTTGTTAAGGAGCTCACAAGTTGGGTGATTTACTCGGATGAGGAGCGGAAGTTCAACAAGGATATAACCGTTGGCCTTATTCGCAGTGAATTACTCAATCTTGCAGAATACAACGTGCACATGGCAAAGCTTATTGATGCGGGACGAAATAAAGCTGCCACGGAGTTTGCCATTTCTCTACTCCAAACTTTGGTGGTTCAGGAATCTGGTGTCAGTGTGTCAGAATTCCACAATCTCATTGATGCCTTGGCAAAGCTTGCAATGAGGTCTGAATCTCCTGAATCTTTACAACAGTTGGTTGAGATTGCCAGAAATCCTACTGCTAATGCAGCTGCTCTTCCTGGTTTTACTATTGGCAAGGAGGATAAGGCTAGGCAATCTAGGGACAAAAAGGACGGCAAAATTTTGATAGTCTGTCTGTTGAAACAGGCTCCTGGTCGTTCCATGACAAGCAGGGAAGACAATAACATGGCAGATTCTGTCGGAGCAGACCCTACTGGTTTTCGTGAACAGGTTACTGTGCTGTTTACCGAATGGTGCCGGATATCTGAACTTTCTGGTACAAATGATACTGCCTGTGCCCATTATATCTCACAATTGCAGCAAAGGGGATTGCTAAACGGGGATGACATGTCCGATCGCTTTTTCCGCATCCTCACGGAACTTTCTGTAGCACATTGCCTATCTCCTGAGGTGGTTACCCCGGGCTCTATGTCACTGCAGTCGCCTCAACAAGTCCAGCACCTATCATTTCTTGCTATTGATATGTATGCAAAACTTGTTGTTTTAGTCTTGAAGTACTGTGCGGTGGAGCAAGGGTCAAGTAAACTTTTACTTTTGCCAAAGATTATGTTGGTAATTGTGAGAGCCATTCAAAAAGATGCAGAGGAGAAGAAGGCATCTTTCAATCCAAGGCCATATTTCAGGTTGTTCATTGACTGGCTCTTGGACCTCGTTTCTCCCGATCCCGTCCTTGATGGTGCTAACTTTCAGGTGTTGATGGCATTTGCGAATATTTTCCATGCATTGCAGCCCCTGAAAGTTCCTGCATTCAGCTTTGCATGGCTTGAGTTGGTGAGTCACAGGAGTTTCATGCCTAAATTGCTCACAGGCAACCCTCAGAAAGGTTGGCCTTTTGTTCAGCGCTTGCTTGTAGACTTGTTCAAATTCATGGAGCCATACTTGAGGAATGCTGAACTGAGGGAGCCGGTTCACTTTCTGTATAAAGGCACTCTGAGGGTGCTACTGGTGTTGCTTCATGATTTCCCAGAGTTTCTCTGTGATTATCATTTCAGCTTCTGTGATGTGATCCCCCCCAGCTGCATCCAGATGCGGAATGTTATCCTCAGTGCATTTCCACGCAATATGAGGCTTCCTGATCCTTCTACTCCCAATTTAAAGATTGATTTGCTAGCAGAGATCAGTCAATCACCAATTATTTTCTCTGAGGTAGATGTTGCTCTGAAAGCAAAGCAGATGAAAGGTGACATAGATGAGTACCTTAAGACAAGGCAGCAGGGGTCTTCATTCTTGACAGAGTTGAAGCAAAGACTGCTGCTTCCACAAAGTGAGACAGCACAAGCTGGGACCCGGTATAATGTACCCTTGATCAACTCCCTCGTCCTTTATGTGGGAATGCAGGCTATTCAGCAGCTACAGACAAAAGCTCCGCCTCATGCACAATCAATGGCCCAAACTGCTCCCATGGATATTTTCTTGGTGGGTGCTGCCATGGATGTTTTCCAGACTTTAATCGGGGACTTAGACACGGAAGGGCGCTACCTCTTCCTTAATGCGGTTGCTAACCAGCTGCGCTACCCAAACAACCATACACATTATTTTTCCTTTGTTCTTCTTTACTTGTTTGCTGAAGCAAACCAGTTTTATGAGAACATGGAATACACCAGCCTGCTTATTCAAGTAATCTATTTTACCATCCCTTTTACACAGGAAATCATCCAGGAGCAAATAACGAGAGTGTTGTTGGAACGTCTGATTGTTAATCGACCTCATCCTTGGGGCCTTCTTATCACTTTCATTGAACTTATCAAGAATCCTAGATACAATTTCTGGAATCGGTCATTCACAAGGTGTGCACCGGAGATTGAGAAACTTTTTGAATCGGTCTCAAGATCATGCGGGGGCCCAAAACCTGTGGATGAGAATATTGTGTCTGGTGGGATCTCTGACAACTTGCACTGA 7542 43.26 MLPFSLTVSNQIRFLLQSLNDSNSDSVIRELFQFVEYGSEGSISLLQTCLDHMHFNGMDIQSMQLDPDFLAALFRYLLDRPNFSTVFCEALKSVTINEGYLGDFCNALHLSVSEKISIGLALSDSEDLDIRMSGQNFCMAQIEELCANPASIDSHEQIQNIVMFLHRSEGLAKHVDSFMQMLSLLQLKDRTPFLLAPLFPDDLCQANVVRNLDVFYECSEFDFDAVLAEMEKEMSMADIMKELGYGCTVNVSHCKEILSLFLPLTEVTISRILSTIARTQAGLEDGHNTYSTFCSALGSNSSSDSSWMSSWNVDVLVDSIKQLAPGTDWVHVMENLDHEGFYFPNEGAFYFFMSIYAHACKDQFPLHAICGSVWNNAEGQLSFLRYAVSAPPEMFTFAHCVKQLAYVDTVHGHKLPHGHANHTWFCLDLLEVLCQLAERGHAGSVRSIIEYPLKHCPEVLLLGMAHINTAFNFILHEVSSAVFPTIAGNSMRSGIILHLWHVNPNVVLWGFVDIHSTDPDNMTRILGICQELKILSSVLEMTPFSFSIRLAALASRNEQINLDKWLNENLSTYKDVFFEECLKFLKEISFDAAQDVSANPFQHSDAVSNVYWETSSILLKVLQAHAGQITSRRLSEEMARLNVASTHANPRLQNGGDTDSSTSDRYADDIEAEANSYFDQIFNGQLTMDAMVQMLARFKESSGKREQSIFECMIANLFEEYKFFPKYPEKQLKIVAILFGSLIKHQLVTHLTLGIALRGVLDALRKSADSKMFAFGAKALEQFVDRLVEWPQYCNHILQISHLRSTHSELVAFIERALARISSGHSDANGSNSASSDQYHGSTQATSDNVEAPESSWQLIGSSTTQPGQQLSSPFQLQQRHQGFLDDRHKASATSLSSMKPLLSPAGQPSVVTAHDATTSQSLQTVASQNASIASATMSSPGFLRPSRGITSTSMVKQHSYNTGFGSALNIETLLVAAERRDNLIEAPASETQDKILFMINNISAANIEAKAKEFTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVNSKALNKEIAKATYENCKVLLGSELIKSISEERSLLKNLGSWLGKFTIGRNQVLRAREIDPKVLIIEAYEKGLMIAVIPFTSKILEPCHNSIAYQPPNPWTMGILGLLSEIYALPNLKMNLKFDIEVLFKNLGVDMKDVKPTSLLKDRVREVEGNPDFSNKDVGASQPQMLAEVNSGMISTLNQVELRPEVSNPAHLGGHSNVLSQYTGASPHLASDPLMEDEKMASLSLSDRLPSGQGLSQVTPSQSLYSVSQLPTSIPNIRTHVIVNQKLSALGLHLHFQRFAIANIIISYSLPSNLTISSSKDRNSVICNRVVPVAMERAIDEIRIPVVERSVTIAIQTTKELVLKDYAMETDETRICNAAHLMVASLAGSLAHVTCKEPLRGSISSQLRNSLQGITIASELLEQAVQLVTNDNLDLGCAVIEQAATEKALKSIDGEIAQRLSLRRKHREGVGSAYFDASTYAQGPMGVVPEALRPKPGRLSLSQQRVYEDFVRFPWQNQPSQSSNSVPPGPPASSGGSASSGLSRAYGSTSGHLNPGVFSSGQGSPAFSTVAQPLDLISEEMDPSASSTHIGATDGVMQHVSEINSVVDLFPSTTAAVPELLLVEPSSAELGTTAHPLHATSVTESLASGISEPLLTTGEGLDKYQIVAQKLETLVTKVARDAEVQEVIAEVPEIILRCISRDEAALAVAQKVFKSLYENASNDLHVDAHLAILDAIRDVCKLVVKELTSWVIYSDEERKFNKDITVGLIRSELLNLAEYNVHMAKLIDAGRNKAATEFAISLLQTLVVQESGVSVSEFHNLIDALAKLAMRSESPESLQQLVEIARNPTANAAALPGFTIGKEDKARQSRDKKDGKILIVCLLKQAPGRSMTSREDNNMADSVGADPTGFREQVTVLFTEWCRISELSGTNDTACAHYISQLQQRGLLNGDDMSDRFFRILTELSVAHCLSPEVVTPGSMSLQSPQQVQHLSFLAIDMYAKLVVLVLKYCAVEQGSSKLLLLPKIMLVIVRAIQKDAEEKKASFNPRPYFRLFIDWLLDLVSPDPVLDGANFQVLMAFANIFHALQPLKVPAFSFAWLELVSHRSFMPKLLTGNPQKGWPFVQRLLVDLFKFMEPYLRNAELREPVHFLYKGTLRVLLVLLHDFPEFLCDYHFSFCDVIPPSCIQMRNVILSAFPRNMRLPDPSTPNLKIDLLAEISQSPIIFSEVDVALKAKQMKGDIDEYLKTRQQGSSFLTELKQRLLLPQSETAQAGTRYNVPLINSLVLYVGMQAIQQLQTKAPPHAQSMAQTAPMDIFLVGAAMDVFQTLIGDLDTEGRYLFLNAVANQLRYPNNHTHYFSFVLLYLFAEANQFYENMEYTSLLIQVIYFTIPFTQEIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFTRCAPEIEKLFESVSRSCGGPKPVDENIVSGGISDNLH 2513
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00930 2513 MobiDBLite consensus disorder prediction 824 880 - -
Tesi1g00930 2513 FunFam Transcription regulator 657 824 - -
Tesi1g00930 2513 Gene3D - 1937 2234 - -
Tesi1g00930 2513 FunFam Ccr4-Not transcription complex subunit 958 1206 - -
Tesi1g00930 2513 Gene3D - 2235 2488 - -
Tesi1g00930 2513 MobiDBLite consensus disorder prediction 1554 1585 - -
Tesi1g00930 2513 Pfam CCR4-Not complex component, Not1 2104 2489 IPR007196 -
Tesi1g00930 2513 FunFam Transcription regulator 1937 2238 - -
Tesi1g00930 2513 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 985 1204 IPR032191 -
Tesi1g00930 2513 CDD NOT1-connector 1693 1884 - -
Tesi1g00930 2513 MobiDBLite consensus disorder prediction 646 661 - -
Tesi1g00930 2513 MobiDBLite consensus disorder prediction 824 884 - -
Tesi1g00930 2513 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1366 1505 IPR024557 -
Tesi1g00930 2513 Gene3D - 656 823 IPR038535 -
Tesi1g00930 2513 Gene3D - 955 1206 - -
Tesi1g00930 2513 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 7 2495 IPR040398 GO:0000288(PANTHER)|GO:0000932(PANTHER)|GO:0017148(InterPro)|GO:0030015(InterPro)|GO:0030015(PANTHER)|GO:0060090(PANTHER)
Tesi1g00930 2513 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 477 623 IPR032194 -
Tesi1g00930 2513 MobiDBLite consensus disorder prediction 645 664 - -
Tesi1g00930 2513 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 645 820 IPR032193 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00930 K12604 CCR4-NOT transcription complex subunit 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:21224763 Tesi22g00295 Tesi-Chr22:21273616 dispersed
Tesi Tesi-Chr1:21224763 Tesi21g00639 Tesi-Chr21:13116495 wgd
Tesi Tesi-Chr1:21224763 Tesi22g00294 Tesi-Chr22:21218427 wgd