AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00931 ATGCCATATTCACCTGAGAGAAACCCTAAGCCATTGAAGAGACCTGTAAGCTGGCCAGACCTCTGGTTCAACGACAAAGCTCTCCAGCATGTGGTTTTCAAGATGCAGCTACAATCTCTCGCGACAGAAGCAGAGGAGAAAGCTACAGTTGAAACAGACGAAACCCTAACCCTAGATTCTTCAAGGACCAACTTAACCTCCCTGTTATCCGACGAGCTTCTTCTTCGAATCCTCTCCAACCTACCTGAATCACAGCGAAATTCGAATTCGCTTGTGTGCAAGCGATGGCTGACTCTGCAAGGCCGTCTGGTTCGCTCCGTCAAGCTCCTAGATTGGGATTTTCTCCAATCCGATAGGCTTTTTTCTCGTTTCCCTAATATTACTGATGTTGATGTCGTGCGCGCGTGTATTGGTTCGCCGATGAATTCTGGGATCTTGTTGACGCATAAATTCGTCTCGATTCACCTTGATTCTGTTTTCGCGCCTGCTGGGTTTATCCGCGAGGAGAATTTACTGTCGTCGGATTCGATTGATAGAGGGCTTCGAGTTCTTGCCCGTGGATGCCCTAATTTACGGAAACTTGTTCTGATTGCTGCTACTGAGACAGGGTTGTCGAATGTTGCTGAGGAATGCCCAACGTTGCAGGAATTGGAGCTGCATCGTTGTACAGATATCTCATTGCGTGGGATTTCTGCCTGCCATAATCTTCAGATCTTGAAATTGATTGGAATTGTGGATGGTTTTTACAATTCTGTGATTTCGGATATCGGTTTGACAATCTTGGCACAAGGGTGTAAGCGGTTGGTGAAGCTTGAGCTGACTGGATGTGAGGGGAGCTATGATGGGATAAAAGCTATTGGTCAGTGCTGCCAAATGCTGGAGGAATTCACTTTATGCGATCACAGGATGGAAGGGGGGTGGATTTCTGCCCTATCATTCTGTGGAAATTTGAAGACTCTGAGGCTTCAATCATGCAAGAGCATTGATCCAAGCCCTGGGCAGGATGAGCATTTGGGTTCTTGCCCTACTCTTGAAGAATTACACTTGCAGCGGTGCCAAATGCGGGATAAGCGGAGTGTAAAAGCATTGTTTCTAGTATGTGAGGCTGTCAAGGAAATTGTCTTTCAGGACTGTTGGGGATTGGACAATGATATGTTCAGCATTGCAAGTACTTGCAGGTATCGGGTTCCCTTATTATGTTGCTTCTCATTTGTTGCCCGATACTGCTTCCAAGCTCTTACATTTCTCAGGAAGAGGATGATTTGGATGTACTTTCGTTATACAACTGATGAGAAAAGTGCAGTAGGTAGGAGGGTAAAGTCTTTATCTTTGGAAGGATGCTCATTGCTAACATCAGAAGGCCTGCAGTCAGTCATTCTCTCCTGGAAGGAGCTTAAAAGCCTAAGAGTCGTCTCATGTAACAATATAAAGGATAGTGAAGTCGCTCCTGAACTATCAGCCTTGTTTTCTGTTCTTAAAGAGTTGCAATGGCGGCCAGATTCCAGAGCTCTTCTTTCATCAAATCTTGCTGGGACTGGCCTCGGAAAAAGGGGCAGTAGATTTTTCAAGAGGGCATGA 1578 45.82 MPYSPERNPKPLKRPVSWPDLWFNDKALQHVVFKMQLQSLATEAEEKATVETDETLTLDSSRTNLTSLLSDELLLRILSNLPESQRNSNSLVCKRWLTLQGRLVRSVKLLDWDFLQSDRLFSRFPNITDVDVVRACIGSPMNSGILLTHKFVSIHLDSVFAPAGFIREENLLSSDSIDRGLRVLARGCPNLRKLVLIAATETGLSNVAEECPTLQELELHRCTDISLRGISACHNLQILKLIGIVDGFYNSVISDIGLTILAQGCKRLVKLELTGCEGSYDGIKAIGQCCQMLEEFTLCDHRMEGGWISALSFCGNLKTLRLQSCKSIDPSPGQDEHLGSCPTLEELHLQRCQMRDKRSVKALFLVCEAVKEIVFQDCWGLDNDMFSIASTCRYRVPLLCCFSFVARYCFQALTFLRKRMIWMYFRYTTDEKSAVGRRVKSLSLEGCSLLTSEGLQSVILSWKELKSLRVVSCNNIKDSEVAPELSALFSVLKELQWRPDSRALLSSNLAGTGLGKRGSRFFKRA 525
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00931 525 SMART LRR-CC-2 436 461 IPR006553 -
Tesi1g00931 525 SMART LRR-CC-2 341 366 IPR006553 -
Tesi1g00931 525 SMART LRR-CC-2 265 289 IPR006553 -
Tesi1g00931 525 SMART LRR-CC-2 211 233 IPR006553 -
Tesi1g00931 525 Gene3D Ribonuclease Inhibitor 431 507 IPR032675 -
Tesi1g00931 525 Gene3D Ribonuclease Inhibitor 280 398 IPR032675 -
Tesi1g00931 525 Gene3D Ribonuclease Inhibitor 62 279 IPR032675 -
Tesi1g00931 525 Pfam Leucine Rich repeat 341 357 IPR001611 GO:0005515(InterPro)
Tesi1g00931 525 PANTHER UNCHARACTERIZED 67 496 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Tesi1g00931 525 FunFam F-box protein At5g51380 62 329 - -
Tesi1g00931 525 SUPERFAMILY F-box domain 63 112 IPR036047 GO:0005515(InterPro)
Tesi1g00931 525 SUPERFAMILY RNI-like 105 378 - -
Tesi1g00931 525 Pfam F-box domain 67 99 IPR001810 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00931 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:21293926 Tesi22g00297 Tesi-Chr22:21331246 wgd