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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00936 ATGGCTTCTCTCAATTTCTTCTTCTTCTTCTTCTCAACGTTATTCTTTGCACCATCACTAGCTACAACCTCCCACTACTCTAGCCTGAACTCAACCAAAACCACTTGCAATGCCACAAAGCACCATCACAAATGGGTTGCACCCACCGGCTACCGTTTAATCACCGTCGACGCTAGTGGCTCCGGCGAATTCCTGTCGGTCCAAGGTGCCGTTGAGTCGGTCCCGGAGAACAACACAGAAAACGTCGTTATTAAGATAAATGCCGGCTATTACATAGAGAAAGTTGTGGTACCGGCGACGAAGCCATACATCACGTTTCAAGGTGCGGGGAGGGAGGTAACGGTGATCGAGTGGCATGATAGAGCGGGTGATCGTGGACCCAACGGTCAACAGCTACGCACTTATAAGACGGCTTCTGTTACTGTTTTGGCTAATTATTTCTCTGCTAGAAACATTAGCTTCAAGAATACAGCACCGGCACCGATGCCAGGGATGGAAGGATGGCAAGCGGCGGCATTCCGTATATCCGGCGACAAGGCATACTTCTCCGGCTGCGGCTTCTACGGCGCGCAAGACACTCTCTGCGACGATGCCGGACGGCATTACTTCAAAGAGTGCTACATAGAAGGCTCCATTGATTTCATTTTCGGCAATGGTCGTTCCATGTACAAAGATTGCGAGCTACACTCGGTAGCGACGAGGTTCGGATCCATAGCGGCGCAAGATAGGAGGACGCCGTATGAGAGAACGGGGTTTGCTTTCGTGCGGTGCAGGGTAACGGGAAGGGGTCCACTATACGTGGGGCGGGCAATGGGACAGTATTCCAGGGTGGTTTACTCCTATACATACTTTGATGACGTGGTCGCTGCTGGTGGTTGGGATGACTGGGACCACACCAGCAACAAGAACAAGACTGTGTTCTTCGGAGTGTACAAGTGCTGGGGTCCCGGAGCTGCAGCAGTGGGTGGTGTGTCGTGGGCCCGAGAGCTTGATTACGAGTCTGCACATCCATTCCTCGTCAAGAGCTTCGTCAATGGAAGACACTGGATCGCACCCTCTGATGCTTAG 1068 52.25 MASLNFFFFFFSTLFFAPSLATTSHYSSLNSTKTTCNATKHHHKWVAPTGYRLITVDASGSGEFLSVQGAVESVPENNTENVVIKINAGYYIEKVVVPATKPYITFQGAGREVTVIEWHDRAGDRGPNGQQLRTYKTASVTVLANYFSARNISFKNTAPAPMPGMEGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSVATRFGSIAAQDRRTPYERTGFAFVRCRVTGRGPLYVGRAMGQYSRVVYSYTYFDDVVAAGGWDDWDHTSNKNKTVFFGVYKCWGPGAAAVGGVSWARELDYESAHPFLVKSFVNGRHWIAPSDA 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00936 355 Gene3D - 51 354 IPR012334 -
Tesi1g00936 355 ProSitePatterns Pectinesterase signature 2. 208 217 IPR033131 -
Tesi1g00936 355 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 31 351 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Tesi1g00936 355 FunFam Pectinesterase 49 352 - -
Tesi1g00936 355 Pfam Pectinesterase 54 346 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Tesi1g00936 355 SUPERFAMILY Pectin lyase-like 52 352 IPR011050 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00936 K01051 pectinesterase [EC:3.1.1.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:21450116 Tesi24g00967 Tesi-Chr24:30761741 dispersed
Tesi Tesi-Chr22:21628775 Tesi1g00936 Tesi-Chr1:21450116 transposed
Tesi Tesi-Chr4:7328415 Tesi1g00936 Tesi-Chr1:21450116 transposed
Tesi Tesi-Chr1:21450116 Tesi22g00307 Tesi-Chr22:21600661 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00350 . 59 213 Carbohydrate Esterase gene family AT3G14310 28.025 3.33e-19 83.2
Tesi1g00351 . 36 218 Carbohydrate Esterase gene family AT1G53830 28.962 1.58e-22 92.8
Tesi1g00892 . 32 361 Carbohydrate Esterase gene family AT5G61570 54.046 7.49e-119 347.0
Tesi1g00936 . 17 362 Carbohydrate Esterase gene family AT5G47500 73.714 0.0 542.0
Tesi1g00968 . 45 215 Carbohydrate Esterase gene family AT3G14310 30.058 2.86e-18 80.5
Tesi1g00969 . 59 215 Carbohydrate Esterase gene family AT3G14310 31.013 2.48e-21 89.4
Tesi1g00970 . 59 150 Carbohydrate Esterase gene family AT3G14310 34.043 1.47e-11 58.9
Tesi1g01112 . 17 403 Carbohydrate Esterase gene family AT5G23870 65.891 0.0 532.0
Tesi1g01280 . 1 598 Carbohydrate Esterase gene family AT3G49220 63.132 0.0 786.0
Tesi1g02197 . 10 380 Carbohydrate Esterase gene family AT5G55590 48.267 4.48e-103 304.0
Tesi2g00151 . 66 359 Carbohydrate Esterase gene family AT5G07430 29.275 4.65e-39 142.0
Tesi2g00184 . 70 281 Carbohydrate Esterase gene family AT5G36210 71.759 2.82e-107 325.0
Tesi2g00186 . 70 729 Carbohydrate Esterase gene family AT5G36210 62.589 0.0 887.0
Tesi2g00202 . 1 326 Carbohydrate Esterase gene family AT3G48700 50.45 1.99e-106 313.0
Tesi2g00203 . 1 329 Carbohydrate Esterase gene family AT3G48700 47.164 1.05e-97 291.0
Tesi2g00204 . 4 329 Carbohydrate Esterase gene family AT3G48700 43.939 1.99e-90 273.0
Tesi2g01848 . 96 551 Carbohydrate Esterase gene family AT5G09760 70.087 0.0 669.0
Tesi3g00973 . 1 557 Carbohydrate Esterase gene family AT1G11580 56.506 0.0 637.0
Tesi3g01168 . 9 380 Carbohydrate Esterase gene family AT5G55590 58.981 4.63e-148 421.0
Tesi4g00030 . 15 592 Carbohydrate Esterase gene family AT3G14310 70.224 0.0 806.0
Tesi4g00037 . 54 582 Carbohydrate Esterase gene family AT1G53830 46.382 4.56e-165 481.0
Tesi4g00108 . 1 118 Carbohydrate Esterase gene family AT3G16970 33.065 5.18e-12 58.2
Tesi4g00109 . 1 118 Carbohydrate Esterase gene family AT3G16970 34.4 1.97e-11 56.2
Tesi4g00110 . 27 127 Carbohydrate Esterase gene family AT3G16970 34.259 3.43e-11 56.2
Tesi4g00111 . 27 118 Carbohydrate Esterase gene family AT3G16970 31.633 1.13e-07 46.2
Tesi4g00230 . 316 425 Carbohydrate Esterase gene family AT3G10710 65.455 2.05e-44 154.0
Tesi4g00329 . 4 357 Carbohydrate Esterase gene family AT5G47500 42.328 1.01e-101 303.0
Tesi4g00516 . 189 304 Carbohydrate Esterase gene family AT1G53830 36.207 1.73e-10 55.5
Tesi4g00820 . 33 235 Carbohydrate Esterase gene family AT5G53370 27.064 4.65e-18 80.1
Tesi4g00825 . 18 554 Carbohydrate Esterase gene family AT1G23200 54.197 0.0 563.0
Tesi4g01043 . 12 342 Carbohydrate Esterase gene family AT5G16080 54.839 5.78e-124 359.0
Tesi4g01093 . 40 427 Carbohydrate Esterase gene family AT5G15860 67.75 0.0 562.0
Tesi4g01583 . 1 460 Carbohydrate Esterase gene family AT3G27320 71.458 0.0 680.0
Tesi5g00712 . 1 328 Carbohydrate Esterase gene family AT3G48700 42.857 7.08e-75 231.0
Tesi6g00378 . 33 551 Carbohydrate Esterase gene family AT5G09760 70.25 0.0 754.0
Tesi6g01054 . 27 118 Carbohydrate Esterase gene family AT3G16970 31.633 4.63e-07 47.4
Tesi6g01064 . 1 328 Carbohydrate Esterase gene family AT3G48700 49.085 5.07e-102 301.0
Tesi6g01482 . 485 621 Carbohydrate Esterase gene family AT5G36210 29.371 1.76e-06 49.7
Tesi7g01265 . 28 319 Carbohydrate Esterase gene family AT5G16080 34.528 4.67e-51 171.0
Tesi7g01270 . 28 341 Carbohydrate Esterase gene family AT5G16080 32.432 3.15e-51 171.0
Tesi7g01296 . 1 284 Carbohydrate Esterase gene family AT2G41530 73.041 5.34e-172 476.0
Tesi8g00017 . 1 415 Carbohydrate Esterase gene family AT3G05910 68.14 0.0 628.0
Tesi8g00039 . 16 565 Carbohydrate Esterase gene family AT3G05610 44.385 1.61e-174 508.0
Tesi8g00123 . 23 337 Carbohydrate Esterase gene family AT2G19150 48.297 2.87e-104 308.0
Tesi8g00140 . 22 234 Carbohydrate Esterase gene family AT3G49220 26.168 1.15e-06 47.4
Tesi8g00245 . 5 578 Carbohydrate Esterase gene family AT1G02810 60.0 0.0 683.0
Tesi8g00246 . 7 567 Carbohydrate Esterase gene family AT3G05610 59.233 0.0 723.0
Tesi8g00278 . 59 216 Carbohydrate Esterase gene family AT3G14310 31.646 1.62e-18 80.9
Tesi8g00861 . 30 99 Carbohydrate Esterase gene family AT3G16970 40.845 5.89e-10 55.5
Tesi8g00862 . 30 135 Carbohydrate Esterase gene family AT3G16970 29.245 2.40e-08 47.8
Tesi8g00863 . 30 118 Carbohydrate Esterase gene family AT3G16970 31.461 3.13e-06 43.1
Tesi9g01025 . 56 216 Carbohydrate Esterase gene family AT3G14310 33.951 1.75e-20 90.1
Tesi9g01037 . 5 361 Carbohydrate Esterase gene family AT1G69940 56.354 4.08e-147 419.0
Tesi9g01061 . 66 528 Carbohydrate Esterase gene family AT3G59010 61.618 0.0 580.0
Tesi9g01062 . 29 547 Carbohydrate Esterase gene family AT2G26440 66.667 0.0 721.0
Tesi9g01063 . 1 592 Carbohydrate Esterase gene family AT3G14310 65.738 0.0 791.0
Tesi10g00312 . 21 324 Carbohydrate Esterase gene family AT1G24793 58.497 2.94e-131 374.0
Tesi10g00338 . 51 220 Carbohydrate Esterase gene family AT3G14310 27.586 9.10e-18 79.3
Tesi10g00515 . 12 342 Carbohydrate Esterase gene family AT5G16080 53.623 2.00e-125 362.0
Tesi10g00567 . 145 362 Carbohydrate Esterase gene family AT1G26120 73.853 3.81e-108 333.0
Tesi11g00689 . 84 388 Carbohydrate Esterase gene family AT1G05310 58.033 4.83e-127 370.0
Tesi11g00911 . 30 118 Carbohydrate Esterase gene family AT3G16970 35.556 6.73e-08 46.6
Tesi11g01113 . 28 341 Carbohydrate Esterase gene family AT5G16080 34.627 1.17e-52 175.0
Tesi12g00160 . 214 526 Carbohydrate Esterase gene family AT3G43270 54.14 6.72e-119 351.0
Tesi12g00240 . 1 283 Carbohydrate Esterase gene family AT2G41530 81.979 1.84e-176 487.0
Tesi12g00372 . 29 337 Carbohydrate Esterase gene family AT5G16080 34.177 1.19e-57 188.0
Tesi12g00548 . 67 388 Carbohydrate Esterase gene family AT1G05310 53.395 5.72e-125 365.0
Tesi12g00818 . 1 427 Carbohydrate Esterase gene family AT3G09410 61.503 0.0 573.0
Tesi14g00039 . 4 118 Carbohydrate Esterase gene family AT3G16970 27.586 6.82e-10 52.8
Tesi14g00155 . 30 118 Carbohydrate Esterase gene family AT3G16970 34.066 8.67e-08 48.9
Tesi14g00160 . 30 118 Carbohydrate Esterase gene family AT3G16970 34.066 1.91e-08 48.1
Tesi14g00446 . 27 125 Carbohydrate Esterase gene family AT3G16970 31.0 3.13e-09 50.1
Tesi14g00463 . 12 84 Carbohydrate Esterase gene family AT3G16970 32.877 4.39e-07 44.7
Tesi14g00466 . 27 135 Carbohydrate Esterase gene family AT3G16970 30.275 3.88e-11 58.9
Tesi14g00467 . 27 131 Carbohydrate Esterase gene family AT3G16970 32.381 1.13e-12 59.3
Tesi14g00468 . 27 137 Carbohydrate Esterase gene family AT3G16970 30.631 2.05e-12 58.9
Tesi14g00469 . 26 135 Carbohydrate Esterase gene family AT3G16970 29.091 1.43e-09 53.9
Tesi14g00472 . 26 135 Carbohydrate Esterase gene family AT3G16970 29.091 1.47e-09 54.3
Tesi14g00475 . 27 137 Carbohydrate Esterase gene family AT3G16970 31.25 3.33e-12 58.2
Tesi14g00476 . 27 135 Carbohydrate Esterase gene family AT3G16970 30.275 7.97e-13 60.1
Tesi14g00489 . 27 135 Carbohydrate Esterase gene family AT3G16970 30.909 2.13e-13 61.6
Tesi14g00493 . 30 135 Carbohydrate Esterase gene family AT3G16970 29.907 8.44e-10 53.1
Tesi14g00494 . 30 118 Carbohydrate Esterase gene family AT3G16970 33.333 2.62e-09 51.2
Tesi14g00495 . 32 135 Carbohydrate Esterase gene family AT3G16970 31.731 3.90e-14 63.2
Tesi14g00501 . 27 135 Carbohydrate Esterase gene family AT3G16970 37.273 1.01e-15 70.9
Tesi14g00889 . 9 567 Carbohydrate Esterase gene family AT3G05610 57.093 0.0 699.0
Tesi14g00890 . 1 541 Carbohydrate Esterase gene family AT3G05620 58.501 0.0 653.0
Tesi14g01002 . 82 378 Carbohydrate Esterase gene family AT5G55590 42.453 5.16e-84 259.0
Tesi14g01055 . 11 415 Carbohydrate Esterase gene family AT3G05910 67.241 0.0 577.0
Tesi14g01064 . 30 130 Carbohydrate Esterase gene family AT3G16970 32.353 6.41e-11 54.7
Tesi15g00921 . 7 361 Carbohydrate Esterase gene family AT5G07410 54.098 1.19e-143 410.0
Tesi15g00942 . 27 511 Carbohydrate Esterase gene family AT2G45220 46.278 2.77e-141 415.0
Tesi15g00943 . 1 581 Carbohydrate Esterase gene family AT1G53840 58.644 0.0 687.0
Tesi15g00944 . 5 561 Carbohydrate Esterase gene family AT3G10710 53.752 0.0 620.0
Tesi15g00945 . 7 572 Carbohydrate Esterase gene family AT4G02330 51.309 0.0 570.0
Tesi15g00946 . 12 526 Carbohydrate Esterase gene family AT3G43270 64.299 0.0 695.0
Tesi16g00920 . 220 531 Carbohydrate Esterase gene family AT4G02300 52.244 6.42e-112 334.0
Tesi16g00947 . 33 518 Carbohydrate Esterase gene family AT4G02320 52.533 0.0 556.0
Tesi16g00948 . 7 566 Carbohydrate Esterase gene family AT3G05610 56.545 0.0 709.0
Tesi17g00072 . 128 389 Carbohydrate Esterase gene family AT1G05310 70.992 1.18e-147 421.0
Tesi17g00861 . 7 380 Carbohydrate Esterase gene family AT5G55590 54.278 1.04e-139 400.0
Tesi18g00449 . 51 219 Carbohydrate Esterase gene family AT3G14310 26.744 7.08e-16 73.2
Tesi18g00452 . 18 554 Carbohydrate Esterase gene family AT1G23200 55.292 0.0 575.0
Tesi18g00639 . 59 362 Carbohydrate Esterase gene family AT5G47500 39.048 1.16e-71 224.0
Tesi18g01059 . 1 460 Carbohydrate Esterase gene family AT3G27320 71.042 0.0 676.0
Tesi19g00010 . 1 612 Carbohydrate Esterase gene family AT2G26450 50.56 0.0 623.0
Tesi19g00011 . 1 361 Carbohydrate Esterase gene family AT1G53840 51.22 5.24e-113 339.0
Tesi19g00012 . 362 581 Carbohydrate Esterase gene family AT1G53840 64.091 3.00e-107 319.0
Tesi19g00412 . 210 262 Carbohydrate Esterase gene family AT2G26440 60.377 3.67e-12 67.0
Tesi19g00456 . 12 339 Carbohydrate Esterase gene family AT5G16080 36.795 8.06e-63 214.0
Tesi20g00079 . 82 388 Carbohydrate Esterase gene family AT1G05310 40.968 3.98e-73 235.0
Tesi20g00081 . 31 336 Carbohydrate Esterase gene family AT2G19150 43.366 1.39e-83 254.0
Tesi20g00082 . 34 336 Carbohydrate Esterase gene family AT2G19150 45.724 2.69e-87 264.0
Tesi20g00083 . 34 336 Carbohydrate Esterase gene family AT2G19150 44.224 8.41e-83 252.0
Tesi20g00084 . 200 336 Carbohydrate Esterase gene family AT2G19150 44.928 2.85e-31 116.0
Tesi20g00100 . 214 526 Carbohydrate Esterase gene family AT3G43270 51.911 1.78e-115 342.0
Tesi20g00109 . 214 526 Carbohydrate Esterase gene family AT3G43270 52.848 2.17e-115 343.0
Tesi20g00150 . 33 515 Carbohydrate Esterase gene family AT4G02320 56.592 0.0 573.0
Tesi20g00169 . 14 567 Carbohydrate Esterase gene family AT3G05610 43.21 1.17e-174 508.0
Tesi20g00467 . 3 315 Carbohydrate Esterase gene family AT1G19190 41.456 5.56e-69 229.0
Tesi20g00774 . 30 135 Carbohydrate Esterase gene family AT3G16970 27.358 1.10e-06 43.5
Tesi20g00778 . 30 86 Carbohydrate Esterase gene family AT3G16970 40.351 1.38e-07 45.8
Tesi21g00174 . 483 709 Carbohydrate Esterase gene family AT5G36210 24.686 6.89e-10 60.8
Tesi21g00494 . 41 321 Carbohydrate Esterase gene family AT5G16080 35.034 4.88e-48 163.0
Tesi21g00495 . 32 256 Carbohydrate Esterase gene family AT1G68620 39.224 7.24e-45 154.0
Tesi21g00496 . 67 305 Carbohydrate Esterase gene family AT5G16080 36.0 1.23e-40 144.0
Tesi21g00594 . 87 237 Carbohydrate Esterase gene family AT3G49220 35.976 2.13e-18 80.9
Tesi21g00595 . 59 219 Carbohydrate Esterase gene family AT3G14310 28.571 3.41e-23 94.0
Tesi21g00596 . 59 213 Carbohydrate Esterase gene family AT3G14310 29.487 3.78e-20 85.9
Tesi21g00601 . 12 511 Carbohydrate Esterase gene family AT2G45220 67.71 0.0 726.0
Tesi21g00770 . 71 194 Carbohydrate Esterase gene family AT5G53370 28.244 1.12e-07 48.9
Tesi21g00797 . 58 306 Carbohydrate Esterase gene family AT1G68620 41.313 4.82e-54 178.0
Tesi22g00028 . 3 395 Carbohydrate Esterase gene family AT4G19420 61.069 8.01e-177 494.0
Tesi22g00218 . 68 197 Carbohydrate Esterase gene family AT5G53370 28.571 1.43e-07 48.9
Tesi22g00219 . 75 205 Carbohydrate Esterase gene family AT5G53370 31.915 4.37e-06 44.3
Tesi22g00307 . 145 362 Carbohydrate Esterase gene family AT5G47500 47.032 2.10e-56 178.0
Tesi22g00308 . 13 181 Carbohydrate Esterase gene family AT5G47500 48.889 1.79e-50 166.0
Tesi22g00346 . 4 511 Carbohydrate Esterase gene family AT2G45220 63.027 0.0 681.0
Tesi22g00347 . 32 441 Carbohydrate Esterase gene family AT3G60730 57.073 7.96e-166 474.0
Tesi22g00350 . 32 519 Carbohydrate Esterase gene family AT3G60730 56.998 0.0 563.0
Tesi22g00355 . 53 222 Carbohydrate Esterase gene family AT1G53830 28.177 2.29e-21 89.7
Tesi22g00437 . 58 256 Carbohydrate Esterase gene family AT1G68620 42.157 4.25e-51 171.0
Tesi22g00438 . 58 302 Carbohydrate Esterase gene family AT1G68620 41.699 4.30e-52 176.0
Tesi22g00439 . 58 241 Carbohydrate Esterase gene family AT1G68620 42.553 1.36e-41 142.0
Tesi22g00440 . 41 311 Carbohydrate Esterase gene family AT5G16080 38.112 7.68e-51 170.0
Tesi22g00441 . 113 324 Carbohydrate Esterase gene family AT5G16080 37.443 2.98e-41 142.0
Tesi22g00442 . 41 324 Carbohydrate Esterase gene family AT5G16080 37.075 3.42e-54 179.0
Tesi22g00443 . 58 247 Carbohydrate Esterase gene family AT1G68620 44.845 8.36e-45 151.0
Tesi22g00781 . 1 586 Carbohydrate Esterase gene family AT5G53370 63.894 0.0 790.0
Tesi22g00784 . 495 702 Carbohydrate Esterase gene family AT5G36210 22.018 9.11e-09 57.4
Tesi24g00038 . 3 357 Carbohydrate Esterase gene family AT4G19420 61.408 9.91e-167 469.0
Tesi24g00620 . 4 329 Carbohydrate Esterase gene family AT3G48700 48.16 4.17e-102 302.0
Tesi24g00845 . 485 617 Carbohydrate Esterase gene family AT5G36210 29.927 4.76e-06 48.1
Tesi24g00967 . 61 358 Carbohydrate Esterase gene family AT5G47500 48.837 1.95e-103 308.0