AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tesi1g00955 | ATGACTCTGCATTTGACAGGATCAAATGAGTTGGAAAATGGGGAGAGCAAGCAGTCCCAGTATTCTTCGGATTCTTTTGAGTCTATTACGTTGAGACTAACAGAAAGCAGTGCGAATGACTACTCTGTTTCATCGAGGCAAGTTGAGGTGAATGAAACAGATAAAAAGGGGTGTCCATATAAGTTGAGAAGAGGGAGAAGGCCCAAAGATTTCCAGAGAGAGATACTCCCGGGTTTGACATCCCTTTCCAGACATGATATTTGTGAGGATATAAACAGTATAGGGGAAATTGTTAATTTGAAAGAGCTTAGGAAGAACAGATCCAGGAAGGTTGGTGGAGGGAACTGGTGTTCGCCTGTCAGAAGCAGAAGGTCGAGATCCATCGAATTGCAGAAGCAGAGCTCGTGTTCTCTGCAATTGACCAACAAGACGGATCAATATGTAGCCTTTAAGGTCAAAACAACCAATCCAAAGAACTATTGTGTGCGCCCCAACACCGGAATTGTTTTGCCCGGGACGACATGCGATGTTACCGTTACTATGCAAGCCCAAAAGGAAGCCCCGCCTGATATGCAATGCAAAGACAAGTTCCTCCTTCAGAGTGTCGCTGCACATTCTGGTGCAACTACAGAGGACATAACCCCAGAAATGTTCAACAAAGAGGTTGGGAAGACTATTGAGGAGTTTAAATTTAGGGTAGTTTATATTCCTGCTAATCCTCCCTTGCCTGGCCCTGAAGGATCCGAAGAAGGATCTTCTCCTAATGGGAACCAAAACACTGTGTTGTTCGACGCTGTAACAAGATCTGTAGAGGAGCCCAAGGAGAAGTCATCAGAGGAGCTGATGAGAAAAGAAATCAGCAAAAGCCGTGCTCGTGACTTCTCCTTCCTGTTTGTAGTGTGGATTGGTCTCCTCGGCATCCTTGTTGGGTACTTCATGAATAAGACATAG | 951 | 45.11 | MTLHLTGSNELENGESKQSQYSSDSFESITLRLTESSANDYSVSSRQVEVNETDKKGCPYKLRRGRRPKDFQREILPGLTSLSRHDICEDINSIGEIVNLKELRKNRSRKVGGGNWCSPVRSRRSRSIELQKQSSCSLQLTNKTDQYVAFKVKTTNPKNYCVRPNTGIVLPGTTCDVTVTMQAQKEAPPDMQCKDKFLLQSVAAHSGATTEDITPEMFNKEVGKTIEEFKFRVVYIPANPPLPGPEGSEEGSSPNGNQNTVLFDAVTRSVEEPKEKSSEELMRKEISKSRARDFSFLFVVWIGLLGILVGYFMNKT | 316 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tesi1g00955 | 316 | PANTHER | VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN | 129 | 313 | IPR016763 | GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER) | |
| Tesi1g00955 | 316 | FunFam | Vesicle-associated protein 1-1 | 125 | 239 | - | - | |
| Tesi1g00955 | 316 | Pfam | MSP (Major sperm protein) domain | 129 | 220 | IPR000535 | - | |
| Tesi1g00955 | 316 | MobiDBLite | consensus disorder prediction | 240 | 259 | - | - | |
| Tesi1g00955 | 316 | ProSiteProfiles | Major sperm protein (MSP) domain profile. | 114 | 236 | IPR000535 | - | |
| Tesi1g00955 | 316 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Tesi1g00955 | 316 | SUPERFAMILY | PapD-like | 129 | 241 | IPR008962 | - | |
| Tesi1g00955 | 316 | Pfam | Plant protein of unknown function (DUF863) | 14 | 98 | IPR008581 | - | |
| Tesi1g00955 | 316 | Gene3D | Immunoglobulins | 125 | 239 | IPR013783 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tesi1g00955 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tesi | Tesi-Chr1:21853523 | Tesi21g00617 | Tesi-Chr21:12648503 | dispersed | |
| Tesi | Tesi-Chr1:21853523 | Tesi1g00957 | Tesi-Chr1:21897351 | proximal | |
| Tesi | Tesi-Chr1:21853523 | Tesi1g00956 | Tesi-Chr1:21879204 | tandem | |
| Tesi | Tesi-Chr16:26490194 | Tesi1g00955 | Tesi-Chr1:21853523 | transposed | |
| Tesi | Tesi-Chr1:8292133 | Tesi1g00955 | Tesi-Chr1:21853523 | transposed | |
| Tesi | Tesi-Chr1:7002741 | Tesi1g00955 | Tesi-Chr1:21853523 | wgd | |
| Tesi | Tesi-Chr1:21853523 | Tesi21g00613 | Tesi-Chr21:12522286 | wgd |