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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00960 ATGGTGGGGTTTTCTTCTGTTCCTCAGTGGCTTGAATCCCTCTTAGGAGAGAAGTTCTTCAATCCATGTTTCATTCATGAGTCTGCGAAGAAGAACGAAAAGAACGTCTTTTGCTTGGATTGTTGCACCAGCATATGTCCTCACTGTTTGTATCCCCATCACTCTCACCGACTCTTGAAGATTCGGAGGTATGTTTATCACGACGTTATACGGTTGGACGATGTTGAGAAATTAATCGACTGTGCGTTTGTTCAAGCGTACACGACGAACAGTGCAAAGGTAATATTTATAAATCAGAGGCCTCAGTCTCGACCATTCAGAGGCTCCGGTAACATCTGCAGCACCTGCGACAGGAGCTTACAAGACCCATATCTCTTCTGTTCTCTTGCCTGCAAGGTTCATCATCTGGTTAGAAGTGAAGGTGGACTGTCGAAATATCTGTACGAATGCGAATTTCTTCGATTACAAGGAGGAAAAGGAGAGAGTTTTTGCGAATTCGACGACGAGCAAATGACCCCAGACTCGGTTCTTGAATCACCGAATTCGTTAAGAACTTCGTCTGGTTCGAGTGCAAGTGTTGGTGGCATGGGTTGCAAGAACTTGGCCTGCACTGCTACAACTGAGTTCGTGAGGAAGAAACGTAGTAGCGTTTCGGTTTCTCGTCCGACATTCCGGCCGATATGTTCACCGGATTCTGAAATGGGGGTCAATATGAACCGGCGAAAGGGTATTCCACACAGGTCTCCTCTTTATTGA 756 46.03 MVGFSSVPQWLESLLGEKFFNPCFIHESAKKNEKNVFCLDCCTSICPHCLYPHHSHRLLKIRRYVYHDVIRLDDVEKLIDCAFVQAYTTNSAKVIFINQRPQSRPFRGSGNICSTCDRSLQDPYLFCSLACKVHHLVRSEGGLSKYLYECEFLRLQGGKGESFCEFDDEQMTPDSVLESPNSLRTSSGSSASVGGMGCKNLACTATTEFVRKKRSSVSVSRPTFRPICSPDSEMGVNMNRRKGIPHRSPLY 251
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00960 251 Pfam PLATZ transcription factor 62 133 IPR006734 -
Tesi1g00960 251 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 5 250 - -
Tesi1g00960 251 MobiDBLite consensus disorder prediction 230 251 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00960 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:21969413 Tesi24g01039 Tesi-Chr24:32051782 dispersed
Tesi Tesi-Chr15:27508774 Tesi1g00960 Tesi-Chr1:21969413 transposed
Tesi Tesi-Chr1:21969413 Tesi21g00611 Tesi-Chr21:12438971 wgd
Tesi Tesi-Chr1:21969413 Tesi22g00332 Tesi-Chr22:22303766 wgd
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi PLATZ 1.5e-26 No_clan TF PLATZ