AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi1g00961 ATGGCTTTTTTTCGGGTATTTTCGTTGATTTTTATCTACATTTCCTTATTTATAAGCCGTTGTTTAGCTGGAGATGCCTTTGTTAACTACGAATGGGATGTCTCTTACATCAATGTTTCTCCTTTGGGTGTTCAACAACAGGTTATAGCGATTGACGGGAAATTTCCGGGTCCTGTTGTTAATGCGACTACTAATAACCATATTGTGGTTAATGTACGGAACAAACTGGACGAGGATCTCCTCATTACTTGGGCCGGAATCCAACATCGTCGTAATTCATGGCAAGATGGTGTTCTCGGGACGAATTGTCCTATCCCTCCGAAATGGAACTTTACCTACCAGTTTCAGGTTAAGGATCAGATTGGGAGCTTCTTCTACTTCCCTTCCCTCCATTTTCAGAGAGCTGCGGGTGGGTATGGTGGTTTTATAATAAATAACCGACCTGTGATCTCGCTGCCGTTTGACACTCCAAATGGGGATATCACCATTATGATTGGTGACTGGTATACCCGAAACCATACGGATCTGAGGAAGACCCTTAGTGCTGGAAAAGACCTCGGGATGCCGGATGGCGTGGTCATTAACGGGAAGGGTCCTTACAGATACAACACCACACTCGTCCCAGATGGCATTGAATATGAAAGTATTGATGTCCACCCAGGCAAAACTTATCGCATTCGAGTACACAATGTCGGAATATCAACTAGTTTGAACTTCAGGATCCAGAATCATAATTTGCTTCTAGCAGAGTCGGAGGGATCTTACACAGTTCAGCAGAATTATACTAGCCTAGATATTCATGTTGGACAGTCTTATTCTTTCCTAGTTACCATGGATCAGAATGCAAGTACCGATTACTATATTGTAGCAAGTGCTAGGTTTGTGAATGAATCACTGTGGAAGAGAGTTACCGGTGTTGCCATCTTGCACTATTCCAATTCCAAGGGAAAGGCAACCGGTCCTCTCCCAGACTCACCAAACGATATATTCGACAAGACGTTTTCAATGAACCAAGCAAGATCCATCAGGTGGAATGTATCTGCTAGTGGTGCTCGCCCTAATCCACAGGGTTCTTTTAGATATGGCTCAATCAATGTGACTGATGTTTATGTGTTAAAGAACAAGCCATTGGAGATGATTAATGGGAAACGTCGAGCTACACTCAGTGGGATCTCATATGTAAATCCAGATACTCCGATCAGGCTTGCTGACCAATTCAAAGTGAAGGGAGTTTATAAGCTTGATTTCCCCAATTTTCCACTAACTGGAGCACCCCGGATGGAAGCATCTGTTATTAATGGTACATATAGAGGATTTATGGAAGTCATTCTACAGAACAACGACACCACGATACAGAGCTATCACATGGATGGATATGCTTTTTTTGTGGTTGGGATGGATTACGGGGATTGGACAAATAACAGCAGGGGCACATATAATAAGTGGGATGGGATAGCTCGCTGCACAGTGCAGGTTTTCCCTGGCGCATGGACAGCAATCTTAATCTCTCTTGATAATGTGGGAGTGTGGAACCTGAGAGCAGAAAACCTCGACAGATGGTATCTCGGCCAAGAAACATATGTCCGGATTGTCAATCCAGAGGATACCAACAAAACGGAGTTGCCCATTCCAGATAATGCCCTTTATTGTGGTGCCCTTGGCAAAATGCAGAAGGCACAGGAGATCTCTTCTGGAGCATTAATCACCAGTGGAAGATCGAAGTTGTTCTTCACTCTACTAATGGTGCTCTTTGCTGCCATTTCCAATCTATTCTAA 1776 43.64 MAFFRVFSLIFIYISLFISRCLAGDAFVNYEWDVSYINVSPLGVQQQVIAIDGKFPGPVVNATTNNHIVVNVRNKLDEDLLITWAGIQHRRNSWQDGVLGTNCPIPPKWNFTYQFQVKDQIGSFFYFPSLHFQRAAGGYGGFIINNRPVISLPFDTPNGDITIMIGDWYTRNHTDLRKTLSAGKDLGMPDGVVINGKGPYRYNTTLVPDGIEYESIDVHPGKTYRIRVHNVGISTSLNFRIQNHNLLLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESLWKRVTGVAILHYSNSKGKATGPLPDSPNDIFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPLEMINGKRRATLSGISYVNPDTPIRLADQFKVKGVYKLDFPNFPLTGAPRMEASVINGTYRGFMEVILQNNDTTIQSYHMDGYAFFVVGMDYGDWTNNSRGTYNKWDGIARCTVQVFPGAWTAILISLDNVGVWNLRAENLDRWYLGQETYVRIVNPEDTNKTELPIPDNALYCGALGKMQKAQEISSGALITSGRSKLFFTLLMVLFAAISNLF 591
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi1g00961 591 Gene3D - 363 562 IPR008972 -
Tesi1g00961 591 Gene3D - 158 351 IPR008972 -
Tesi1g00961 591 PANTHER MULTI-COPPER OXIDASE 29 541 IPR045087 GO:0016491(PANTHER)|GO:0046658(PANTHER)
Tesi1g00961 591 Pfam Multicopper oxidase 160 314 IPR001117 -
Tesi1g00961 591 Gene3D - 19 146 IPR008972 -
Tesi1g00961 591 Pfam Multicopper oxidase 34 147 IPR011707 GO:0005507(InterPro)
Tesi1g00961 591 FunFam Monocopper oxidase-like protein 158 351 - -
Tesi1g00961 591 SUPERFAMILY Cupredoxins 377 551 IPR008972 -
Tesi1g00961 591 FunFam Monocopper oxidase-like protein 363 561 - -
Tesi1g00961 591 FunFam Monocopper oxidase-like protein SKU5 22 146 - -
Tesi1g00961 591 CDD CuRO-1-AAO-like-1 30 145 IPR034273 GO:0005507(InterPro)
Tesi1g00961 591 SUPERFAMILY Cupredoxins 22 174 IPR008972 -
Tesi1g00961 591 SUPERFAMILY Cupredoxins 156 353 IPR008972 -
Tesi1g00961 591 Pfam Multicopper oxidase 398 534 IPR011706 GO:0005507(InterPro)|GO:0016491(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi1g00961 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:22021078 Tesi2g00513 Tesi-Chr2:11035565 dispersed
Tesi Tesi-Chr1:22021078 Tesi22g00337 Tesi-Chr22:22426504 wgd