AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00618 ATGGCTTCTGCAATCGCTTTAAGAGGAGCCACCGCTTCAAACCTCTTCAATAAAAAACTCCTCAACCCAGTTCGCTACTTGGCCACCGTACCATCCTCCTCCCGTCCCTTCAACACCAGCGCTCAGAAGCGTGATTCCGACAACGCCGATCGCAGCGTCGCCATTGATCGCCGGCCGGAAATGTCCGTATCTCGACGCCGGGAGTCTCCTGTTATTCCCTTTACAGATGTGTTTGATCCGTTTTCTCAAGCATGGAGCTTGAGCCAGGTGATGAACCTAATGGATCAGTTCATGGAGGATCCGTTCCTCGCTGCTTCGAGAGGAATGGGAGCTGGATCGAGGGGAGCAGGGTGGGATGTGAAGGAAGACGAGGAAGCTCTGTATGTGAGGATGGACATGCCTGGGCTCGGGAAAGAGGACGTGAAGGTGTTGGTGGAGCAGAACACACTAGTGATCAAAGGAGAAGGCCAGAAGGAATCGGAGGAGGAAGAGAGTGGAAGAAGGTATACTAGCAGGCTCGATCTCCCTCAGAATCTATACAAGCTAGATCAAATCAAAGCTGAGATGAAGAATGGAGTTCTTAAGGTTGTGGTGCCCAAGGTGAAGGAGGAGGAGAGAAAGGATGTTGTTCAGGTCCCAATCGAGTAA 648 51.7 MASAIALRGATASNLFNKKLLNPVRYLATVPSSSRPFNTSAQKRDSDNADRSVAIDRRPEMSVSRRRESPVIPFTDVFDPFSQAWSLSQVMNLMDQFMEDPFLAASRGMGAGSRGAGWDVKEDEEALYVRMDMPGLGKEDVKVLVEQNTLVIKGEGQKESEEEESGRRYTSRLDLPQNLYKLDQIKAEMKNGVLKVVVPKVKEEERKDVVQVPIE 215
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00618 215 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 9 206 IPR044656 -
Tesi21g00618 215 Pfam Hsp20-alpha crystallin family 119 214 IPR002068 -
Tesi21g00618 215 MobiDBLite consensus disorder prediction 32 64 - -
Tesi21g00618 215 CDD ACD-sHsps-like 119 192 - -
Tesi21g00618 215 Gene3D - 70 214 IPR008978 -
Tesi21g00618 215 MobiDBLite consensus disorder prediction 44 64 - -
Tesi21g00618 215 SUPERFAMILY HSP20-like chaperones 93 207 IPR008978 -
Tesi21g00618 215 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 109 215 IPR002068 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00618 K13993 HSP20 family protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr21:12673362 Tesi22g00312 Tesi-Chr22:21739991 dispersed
Tesi Tesi-Chr21:12673362 Tesi13g00415 Tesi-Chr13:8725148 transposed