AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00625 ATGAAATTCGGCAAGAGATTGAAACAGCAAATCCAGGAGACGTTGCCTGAGTGGCGCGACAAGTTCCTGTCCTACAAGGATTTGAAGATTCTTGTTCGGCTCATATCGGGGTCTCCTGAGTCTGGGAAGGCAGAACAGGAGTTTGTGTGCTTGTTGGATATCGAGATTGATAAGTTCAATGCTTTCTTCATAGAGCAAGAAGAGGATTTCATAATCCGTAATAAAGAGTTACAACAGAGGATCCAGAGGGTGATTGACACGTGGGGACCAAATGGAAGTCGGCCTTCAGAAACGGATTATAAAGAGGAGATGGGAAGGATCAGAAAAGACATTGTCAATTTCCATGGTGAAATGGTGCTCTTGGAGAACTACAGCAATATAAATTACACAGGGTTGGCAAAAATCTTGAAGAAGTATGACAAGCGAACCGGTGGTCTGTTGCGCCTGCCATTTATTCAGAAGGTGTTGCAGCAGCCCTTCTTTACAACTGATCTTGTTTCAAAGCTCGTTAAGGAATGTGAAAGCACCATAGATGCGGTGTTCCCTGTCGTGGAGGAAGAAGGGATAAGAGAAGAAAGAGGAAAAGGAGAAGCAATAACGGTTGGCGGACAAAGCATTTTCAGGAATTCGGTCGCTGCTCTACTGACCATGCAAGAGATTAGAAGAGGGAGCTCTACCTACAGTCACTTTTCTCTTCCTCCTCTGAACTTACCGGATTCTGATCTCATTCACTCCTTCCAACTTAACTCTCCTATTCCTATTCTCTGA 768 44.4 MKFGKRLKQQIQETLPEWRDKFLSYKDLKILVRLISGSPESGKAEQEFVCLLDIEIDKFNAFFIEQEEDFIIRNKELQQRIQRVIDTWGPNGSRPSETDYKEEMGRIRKDIVNFHGEMVLLENYSNINYTGLAKILKKYDKRTGGLLRLPFIQKVLQQPFFTTDLVSKLVKECESTIDAVFPVVEEEGIREERGKGEAITVGGQSIFRNSVAALLTMQEIRRGSSTYSHFSLPPLNLPDSDLIHSFQLNSPIPIL 255
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00625 255 CDD SPX-AtSPX1-like 2 142 - -
Tesi21g00625 255 ProSiteProfiles SPX domain profile. 1 153 IPR004331 -
Tesi21g00625 255 PANTHER SPX DOMAIN-CONTAINING PROTEIN 3 1 243 IPR031142 GO:0016036(InterPro)
Tesi21g00625 255 Pfam SPX domain 96 154 IPR004331 -
Tesi21g00625 255 Pfam SPX domain 1 32 IPR004331 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00625 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr15:30168700 Tesi21g00625 Tesi-Chr21:12838894 dispersed
Tesi Tesi-Chr21:12838894 Tesi4g00157 Tesi-Chr4:3760803 dispersed
Tesi Tesi-Chr4:28529738 Tesi21g00625 Tesi-Chr21:12838894 transposed
Tesi Tesi-Chr1:7225579 Tesi21g00625 Tesi-Chr21:12838894 wgd