AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tesi21g00643 | ATGGAAAATAGCGGGAATTTATTCAACTACAACGGTAACAGAGGGCAAAATGGTAATAACAGCAATCTCTCCTGGGATATCTGGGAGCCTCGTTTCGACTGGACCAGCAACTCCTTCAACGACGACTCCACTCCGACGAACCAAGAAGCCCACGCGCTCATGTTCAACAACAACGTTCACGCGCACCCTAACCACCACCACCACCACCCGTCTTTGTACGCCGGAGGCGGGTCGCACCTGCACCCGGATCCTCACCTCACGTGTTTGAAGCTCGGAAAGAGGCATTACTTTGAGGATACTAGTCCTCTAGATGAACGACACGTGGATGGGTTCTCGATTGGCAAGAGAGGGAGACCCTACGGCGCCGGCGTTGGTGGGCCGTCTTCGTCGGCGCCGGCCGCCGTGGCCGTGCCGAGGTGTCAAGTAGAGGGGTGCCACGTGGCGCTTGTGAACGCGAAGGATTATCATAGGAGGCATAAGGTTTGTGAGATGCACTCAAAGGCGCCTAGGGTGGTGGTGCTTGGGATCGAACAGCGGTTCTGCCAGCAGTGTAGCAGGTTTCATGTAGTATCAGAGTTTGACGATTCAAAGAGGAGTTGCAGGAGGAGATTAGCAGGGCACAACGAGCGGAGGAGAAAGAGCTCTAATGATTCTATAACCAGGAACCCTTCTCAAGATACTAGATCGATAGGTGGGAGATTCCCATGTATATCAGCGCCGACAGGCCGTGCTCTCTCTCTTCTGTCATCCAAGAGTGCTTCCTGGGTTTCTCCTGCCGATCTCTCCTCCCGATCCAGTGCTGCACTCCGAGAACTGATTGCAGAGAATCGCGCAGCTGTCCTCGCCAGGCAGCTCTTCGACCGAGGCTGGCACCACCACTCAGTGGATGACTTGAGTTGCACCCAACCGGGTGTCCTTTCCCATGTGCCACACCAACACCATGTATTTCCTGAGCCACCTGATTGGGACAGGTTCGGTGAAGCAGGCGCACATGTGACGTTAGACCTTATGCAAGCACCAAGTTCGCCGTTTGGATTCCTGTCTGGAAGGAGCAAGTCCAAGGAAGAGGAAGAGTGTTGTGAGATATGGAAGACTTTGGAGGGAACCCATGTGGTTTGA | 1119 | 54.24 | MENSGNLFNYNGNRGQNGNNSNLSWDIWEPRFDWTSNSFNDDSTPTNQEAHALMFNNNVHAHPNHHHHHPSLYAGGGSHLHPDPHLTCLKLGKRHYFEDTSPLDERHVDGFSIGKRGRPYGAGVGGPSSSAPAAVAVPRCQVEGCHVALVNAKDYHRRHKVCEMHSKAPRVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSNDSITRNPSQDTRSIGGRFPCISAPTGRALSLLSSKSASWVSPADLSSRSSAALRELIAENRAAVLARQLFDRGWHHHSVDDLSCTQPGVLSHVPHQHHVFPEPPDWDRFGEAGAHVTLDLMQAPSSPFGFLSGRSKSKEEEECCEIWKTLEGTHVV | 372 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tesi21g00643 | 372 | ProSiteProfiles | Zinc finger SBP-type profile. | 137 | 214 | IPR004333 | GO:0003677(InterPro) | |
| Tesi21g00643 | 372 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 79 | 338 | IPR044817 | GO:0003677(InterPro) | |
| Tesi21g00643 | 372 | FunFam | Squamosa promoter-binding-like protein 14 | 131 | 201 | - | - | |
| Tesi21g00643 | 372 | SUPERFAMILY | SBT domain | 138 | 219 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Tesi21g00643 | 372 | Gene3D | - | 133 | 201 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
| Tesi21g00643 | 372 | MobiDBLite | consensus disorder prediction | 204 | 233 | - | - | |
| Tesi21g00643 | 372 | Pfam | SBP domain | 140 | 213 | IPR004333 | GO:0003677(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tesi21g00643 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tesi | Tesi-Chr21:13418607 | Tesi9g00020 | Tesi-Chr9:2027484 | dispersed | |
| Tesi | Tesi-Chr21:13418607 | Tesi22g00289 | Tesi-Chr22:21106798 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Tesi1g01800 | . | 2 | 174 | SBP-box gene family | AT1G53160 | 51.613 | 5.03e-46 | 147.0 | |
| Tesi2g00027 | . | 1 | 1034 | SBP-box gene family | AT1G20980 | 52.036 | 0.0 | 1008.0 | |
| Tesi2g01304 | . | 48 | 174 | SBP-box gene family | AT1G53160 | 58.015 | 1.81e-45 | 146.0 | |
| Tesi3g00672 | . | 62 | 180 | SBP-box gene family | AT3G15270 | 57.258 | 6.77e-45 | 142.0 | |
| Tesi4g01650 | . | 1 | 287 | SBP-box gene family | AT5G50670 | 40.667 | 2.12e-52 | 177.0 | |
| Tesi5g01071 | . | 120 | 204 | SBP-box gene family | AT3G60030 | 55.294 | 2.52e-26 | 100.0 | |
| Tesi6g01522 | . | 112 | 204 | SBP-box gene family | AT3G60030 | 56.989 | 1.89e-32 | 119.0 | |
| Tesi6g01611 | . | 1 | 1034 | SBP-box gene family | AT1G20980 | 50.818 | 0.0 | 995.0 | |
| Tesi7g01433 | . | 32 | 375 | SBP-box gene family | AT2G42200 | 43.011 | 1.72e-62 | 202.0 | |
| Tesi8g00045 | . | 1 | 880 | SBP-box gene family | AT2G47070 | 51.591 | 0.0 | 926.0 | |
| Tesi8g00401 | . | 14 | 379 | SBP-box gene family | AT5G18830 | 56.486 | 1.05e-126 | 401.0 | |
| Tesi9g00020 | . | 10 | 417 | SBP-box gene family | AT5G43270 | 38.716 | 3.94e-82 | 261.0 | |
| Tesi10g01016 | . | 106 | 240 | SBP-box gene family | AT1G69170 | 55.474 | 6.34e-48 | 169.0 | |
| Tesi10g01348 | . | 1 | 358 | SBP-box gene family | AT5G50670 | 37.5 | 1.18e-60 | 199.0 | |
| Tesi11g01395 | . | 32 | 375 | SBP-box gene family | AT2G42200 | 42.338 | 3.57e-66 | 213.0 | |
| Tesi12g00132 | . | 110 | 375 | SBP-box gene family | AT2G42200 | 39.446 | 2.34e-37 | 137.0 | |
| Tesi13g01113 | . | 192 | 354 | SBP-box gene family | AT3G57920 | 29.48 | 3.47e-07 | 47.8 | |
| Tesi14g01019 | . | 1 | 926 | SBP-box gene family | AT3G60030 | 48.004 | 0.0 | 854.0 | |
| Tesi16g00958 | . | 208 | 879 | SBP-box gene family | AT2G47070 | 52.179 | 0.0 | 706.0 | |
| Tesi17g00516 | . | 35 | 174 | SBP-box gene family | AT1G53160 | 54.167 | 4.20e-46 | 147.0 | |
| Tesi18g00381 | . | 1 | 198 | SBP-box gene family | AT1G69170 | 41.667 | 3.15e-44 | 163.0 | |
| Tesi19g00854 | . | 1 | 409 | SBP-box gene family | AT5G43270 | 41.501 | 3.98e-90 | 279.0 | |
| Tesi20g00137 | . | 200 | 881 | SBP-box gene family | AT2G47070 | 50.314 | 0.0 | 698.0 | |
| Tesi20g00138 | . | 1 | 211 | SBP-box gene family | AT2G47070 | 55.172 | 5.33e-73 | 237.0 | |
| Tesi21g00643 | . | 126 | 248 | SBP-box gene family | AT1G27360 | 54.762 | 8.99e-38 | 138.0 | |
| Tesi22g00289 | . | 1 | 312 | SBP-box gene family | AT1G02065 | 43.697 | 6.28e-70 | 220.0 | |
| Tesi23g00583 | . | 83 | 237 | SBP-box gene family | AT1G69170 | 54.601 | 5.43e-48 | 170.0 | |
| Tesi24g01063 | . | 1 | 1033 | SBP-box gene family | AT1G20980 | 52.613 | 0.0 | 997.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Tesi | SBP | 1.5e-31 | No_clan | TF | SBP |