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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00661 ATGACACACATTGTTAACCTTCACATGAAATGTGTGATATGGTGGATGCAGCAGGAGTGCGTTTTCAGTGTCTACGTAAAGACAGGATCTGTCCTCAAGGCAGGAACAGACTCCAGGATCAGCTTGACCCTCGGTGATGCCGCCGGCCGATCGGTGCAGGTGCCTGACCTGGAGGGTTGGGGCCTGATGGGACCAGGCTACGACTACTACGAGAGGAGCAACCTTGATATATTCAGTGGGCGTGGTCCATGCATAGGTGCACCACTCTGCAGCCTCAACTTAACGTCGGACGGGTTAGGAGCTCACCATGGCTGGTACTGTGACTATGTGGAGGTAACATCGACCGGGCCTCACAAGGACTGTAGCCAGACCATCTTCTACGTCGACCAGTGGCTCGCCGCCGACGCTTCTCCTTATCAGCTGACTGCACTTCTGAATGGCTGCAAACAACATACTACTGCACCAGAGATTGCTAGAACTGGGCACTTTGTTGTTGGGAACCATTTAGGATCTGCTTCACAGTAA 525 52.95 MTHIVNLHMKCVIWWMQQECVFSVYVKTGSVLKAGTDSRISLTLGDAAGRSVQVPDLEGWGLMGPGYDYYERSNLDIFSGRGPCIGAPLCSLNLTSDGLGAHHGWYCDYVEVTSTGPHKDCSQTIFYVDQWLAADASPYQLTALLNGCKQHTTAPEIARTGHFVVGNHLGSASQ 174
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00661 174 PANTHER PLAT DOMAIN-CONTAINING PROTEIN 17 153 - -
Tesi21g00661 174 ProSiteProfiles PLAT domain profile. 20 146 IPR001024 GO:0005515(InterPro)
Tesi21g00661 174 Gene3D PLAT-LH2 domain 21 139 - -
Tesi21g00661 174 Pfam Embryo-specific protein 3, (ATS3) 16 120 IPR010417 -
Tesi21g00661 174 SUPERFAMILY Lipase-lipooxygenase domain (PLAT-LH2 domain) 17 140 IPR036392 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00661 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr21:13966799 Tesi6g00571 Tesi-Chr6:29255023 dispersed
Tesi Tesi-Chr21:13966799 Tesi5g00370 Tesi-Chr5:32559829 transposed