AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00718 ATGGCCGAAGAAGAAGAAGTTCTCATGGAAGTCGAAGCTCTTCAAGCAGTTTACGGTGACGATTGTCTGGTGATTGAGAAATTTCCACCCAATTTCCATCTCCACATAAACCCTCGAACTGCCGACGATTCATCACAGCAGTTTGTAGAAGCTGTTATCGGAGTACGAGCTTGTCCCCAGTATCCTGAAGAACCACCTCATCTTGAGATTATAGGATCCAAGGGTCTTGATGGACATCGGAAAAAGCATCTGATAACTAGAATACAAGAAAAGGCCCATGAGCTCTCCTCTTGTTTAATGCTTGTAGCACTTTGTGAGGAAGCGGTGGAGACGTTATCTAACATGAATCACCCTGATGGAAATTGTCCGTTGTGTCTATATCCTTTGGTTCTGGAAGATAAGCAGAACAGTTTCTTGCCATTTATGAAGTTGATGTCTTGTTTCCACTGCTTTCACAGTGAGTGCATTATTAGGTGGTGGAAATGGCTCCAAGAGCAAAAAGAAATCAATCCTAATACCTCATCTTATGATACTGTGTGTCCTTCCAGAGATCTAGAAAACCAAAGAGAGATGCATGGAACGATGAAAGCGAATATGGGAAACTGCCCTGTCTGCCGCATGATTTTCCACACCGAGGATATTGAACATGTGCTCAACTTGGTTGGAACTCATTCATTTCAATTGAATCTCGAGGAAACGGAAGCCAGCAGTGATGAGGCGCTCCTCCAATCTGATTCAGAGAATATCAGAAGACAGAAATTTGAGACTCTATTAAAATTGCAGCAAGAGAACAGCGGCCTAATCGAACCCAAAAGTATTGAAGTCTTATTGCCAGGTACATTTCTTCCCGAGTCCATCACTATACCTACCGTGTCTGTTAAAGCTACCAACAAGCAACAACAAGGAGATCCAACTTCCACGCTTGCCTCAGAGACAGATTCAAGTGGTTCCTCAAACAAGCCTAGCACCAGTAAGCCCAAGAACTCAGGCATGAGAAAGTACAGAGCCCAGAATTCAAGAAAACAGCTAAAACAGTGGATTAAGAAAGAGAATAGTGCTACAGAATAA 1068 42.98 MAEEEEVLMEVEALQAVYGDDCLVIEKFPPNFHLHINPRTADDSSQQFVEAVIGVRACPQYPEEPPHLEIIGSKGLDGHRKKHLITRIQEKAHELSSCLMLVALCEEAVETLSNMNHPDGNCPLCLYPLVLEDKQNSFLPFMKLMSCFHCFHSECIIRWWKWLQEQKEINPNTSSYDTVCPSRDLENQREMHGTMKANMGNCPVCRMIFHTEDIEHVLNLVGTHSFQLNLEETEASSDEALLQSDSENIRRQKFETLLKLQQENSGLIEPKSIEVLLPGTFLPESITIPTVSVKATNKQQQGDPTSTLASETDSSGSSNKPSTSKPKNSGMRKYRAQNSRKQLKQWIKKENSATE 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00718 355 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 118 222 IPR013083 -
Tesi21g00718 355 Gene3D Ubiquitin Conjugating Enzyme 2 117 IPR016135 -
Tesi21g00718 355 ProSiteProfiles Zinc finger RING-type profile. 122 181 IPR001841 -
Tesi21g00718 355 Pfam RWD domain 5 111 IPR006575 GO:0005515(InterPro)
Tesi21g00718 355 SUPERFAMILY RING-U-box 113 210 - -
Tesi21g00718 355 FunFam RWD domain-containing protein 118 221 - -
Tesi21g00718 355 PANTHER RING FINGER PROTEIN 25 2 341 IPR039133 GO:0005634(PANTHER)|GO:0016567(PANTHER)|GO:0061630(InterPro)|GO:0061630(PANTHER)
Tesi21g00718 355 SUPERFAMILY UBC-like 4 112 IPR016135 -
Tesi21g00718 355 ProSiteProfiles RWD domain profile. 9 115 IPR006575 GO:0005515(InterPro)
Tesi21g00718 355 SMART ring-2 122 205 IPR001841 -
Tesi21g00718 355 MobiDBLite consensus disorder prediction 293 355 - -
Tesi21g00718 355 FunFam eIF-2-alpha kinase GCN2 1 121 - -
Tesi21g00718 355 MobiDBLite consensus disorder prediction 293 336 - -
Tesi21g00718 355 SMART RWD2001b 9 115 IPR006575 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00718 K10640 E3 ubiquitin-protein ligase RNF25 [EC:2.3.2.27]