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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00739 ATGGAGGCCCTGAGAGCCTCTTACGGTGGTTGCTCCTCCGATTCAGAACCTGATTCGGACTCCCCGCCTCCAAATCCAATAGACACCAATTCAAGTCCTCAAGGACCGGACAGGTTGCCGCCACCGCCTCTCGCTCTCCTTGAGCCGCCTAATTCACTCGGCATTCATATACCATCTACAACCAGGAAATGGCTTGTACAATTTCTGAAAAAAATTACCTCTCTCGTGCCTGGCCTTCATGTTGTTGACGTTGACATCTCACTTGATGTTCTATGCAAAGATGAGCTGAAGCTCGAACAAGTTGCCTTAGGAAGGGAATTTCACATAAGTTTGGGAAGAACTGTTCCAATTCGAGTGCACCAGATTGACTCAGTTGTGACAATGCTTCGCCAAAAGCTTCAGGCTCAGAGGCGACCAGTGAATCGCGGCTTCCCCTTCAGTGCCAAATTGAAATCAGTGAATCGCGGCTTCCTCTTTGGCATCACAGACCATATTCTCCAAAACCTCTCAATCGCTATGCGCGGTTACCATGATTCGTTCACGGCGAGATGTGAGAATGAGCTTGATGATGAAACCCCAACATGTGGGTGTGCGAGATTCCATGATTACCACAGCAATCAGACTCCGACTGGGTTCAGTCCCATCGTGATAACGAAGCAGATTAATGCCGTCAATGAGATATATCGGCTACATAATCTTTCCGAATTTTATAAGGATCCACGCCCTCACATATCCTTAGCATGGGCGTTAGGTGACATCAGCCATTCTCTCCAGCGGGTGGTTCAAGAAGAACTTACGAAACACTGTACCAATGGGGGCTCCTCACAGAAACGTATTTTTACCAGCAAATTCAGTGGCATTGAGTGTAGGATAGGTAATAAAACTTATAAAATATGTAAATTCTCGGAAGAGTAA 915 46.67 MEALRASYGGCSSDSEPDSDSPPPNPIDTNSSPQGPDRLPPPPLALLEPPNSLGIHIPSTTRKWLVQFLKKITSLVPGLHVVDVDISLDVLCKDELKLEQVALGREFHISLGRTVPIRVHQIDSVVTMLRQKLQAQRRPVNRGFPFSAKLKSVNRGFLFGITDHILQNLSIAMRGYHDSFTARCENELDDETPTCGCARFHDYHSNQTPTGFSPIVITKQINAVNEIYRLHNLSEFYKDPRPHISLAWALGDISHSLQRVVQEELTKHCTNGGSSQKRIFTSKFSGIECRIGNKTYKICKFSEE 304
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00739 304 Gene3D Cyclic phosphodiesterase 52 299 - -
Tesi21g00739 304 PANTHER UNCHARACTERIZED 55 144 IPR027521 GO:0000175(PANTHER)|GO:0004518(InterPro)|GO:0005634(PANTHER)|GO:0034477(PANTHER)|GO:0034477(InterPro)
Tesi21g00739 304 MobiDBLite consensus disorder prediction 1 47 - -
Tesi21g00739 304 Pfam Uncharacterised conserved protein 217 299 IPR027521 GO:0004518(InterPro)|GO:0034477(InterPro)
Tesi21g00739 304 Pfam Uncharacterised conserved protein 55 140 IPR027521 GO:0004518(InterPro)|GO:0034477(InterPro)
Tesi21g00739 304 MobiDBLite consensus disorder prediction 19 47 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00739 K23093 U6 snRNA phosphodiesterase [EC:3.1.4.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:8494110 Tesi21g00739 Tesi-Chr21:16384430 wgd