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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00747 ATGTATAAAGAACGAGGAGGAGTCGGATCGAAGTCGGAGATCGGTCCTTTTGATCGTAAGCGAATCAATGATGCCTTAGACAAGCACCTGGAGAAATCCGTGCCGTCCACCTCCGCCGGAAAGCCGCCACCTGATCTCATGGACACTCGTTCAGCGTCTCTCTCGAAGAACAAATGCTCCGAAGGGGAATCTGAAACAGACAGTGAAGGGTCAGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTTTGCAATCTGCGAGGAAATGAGTTCTTTTGTGAAGTTGATGACGAGTACATTCAAGATGATTTTAACCTTTGTGGGTTAAGCAGTCAAGTTCCTTACTATGATTATGCGCTTGATTTGATTTTAGATGTTGAATCCTCCCATGGTATGCATTGTTCTTTCTTACAATTAGATTATTGTCATTAA 444 43.69 MYKERGGVGSKSEIGPFDRKRINDALDKHLEKSVPSTSAGKPPPDLMDTRSASLSKNKCSEGESETDSEGSDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGMHCSFLQLDYCH 147
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00747 147 MobiDBLite consensus disorder prediction 25 78 - -
Tesi21g00747 147 SUPERFAMILY Casein kinase II beta subunit 80 137 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00747 147 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 76 142 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00747 147 PRINTS Casein kinase II regulatory subunit family signature 82 98 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00747 147 PRINTS Casein kinase II regulatory subunit family signature 99 113 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00747 147 Pfam Casein kinase II regulatory subunit 82 134 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00747 147 PANTHER CASEIN KINASE II SUBUNIT BETA 63 139 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Tesi21g00747 147 SMART CK-II-beta-2 82 145 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00747 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:17546232 Tesi21g00747 Tesi-Chr21:16658027 dispersed
Tesi Tesi-Chr21:16658027 Tesi23g00112 Tesi-Chr23:2373644 dispersed
Tesi Tesi-Chr21:16658027 Tesi22g00239 Tesi-Chr22:19544013 wgd