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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi21g00748 ATGAGAGGTGCCATCGAGCAATTCGACTTGGAGGAGATCTTCTCGCGCTCCAGTCCTGCGAGGGAGTTGGCCGCATATCTTCGGCGTTTTGGTTTCTTTGGAACGGGCCTCGCTGAGGCGAAGATCTGGGCATGCATGGATAATCCGGGTTCCATTTGTTTGTTATGGTCATGCACAGGTGATATGTTCACCGAGGAACAGAATGAAATGGTTGAATCAGAAGCAGAGATGCTGTATGGTCTGATTCATGTCCGATACATATTAACTAGCAAAGGAATGTCTGCGATGTTAGAAAAGTACAAGAGCAATGACTTTGGGAGATGCCCAAGAGTTTACTGCTGTGGACAACCTTGCCTTCCGGTTGGTCAATCTGACATTCCACGGTCGAGTACCGTAAAAATCTACTGTCCCAAGTGTGAAGATGTTTACTATCCCCGATCCAAGTACCAAGGCAGTATCCTTCCTTCTATCAAATGA 477 46.96 MRGAIEQFDLEEIFSRSSPARELAAYLRRFGFFGTGLAEAKIWACMDNPGSICLLWSCTGDMFTEEQNEMVESEAEMLYGLIHVRYILTSKGMSAMLEKYKSNDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDVYYPRSKYQGSILPSIK 158
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi21g00748 158 SMART CK-II-beta-2 23 158 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 35 104 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 FunFam Casein kinase II subunit beta 105 156 - -
Tesi21g00748 158 SUPERFAMILY Casein kinase II beta subunit 60 150 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 PANTHER CASEIN KINASE II SUBUNIT BETA 59 153 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Tesi21g00748 158 Gene3D - 105 153 - -
Tesi21g00748 158 Pfam Casein kinase II regulatory subunit 62 150 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 ProSitePatterns Casein kinase II regulatory subunit signature. 108 139 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 PRINTS Casein kinase II regulatory subunit family signature 104 125 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 PRINTS Casein kinase II regulatory subunit family signature 126 147 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi21g00748 158 PRINTS Casein kinase II regulatory subunit family signature 79 100 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi21g00748 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr21:16688491 Tesi23g00112 Tesi-Chr23:2373644 dispersed
Tesi Tesi-Chr21:16688491 Tesi22g00239 Tesi-Chr22:19544013 transposed