AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00116 ATGGCACTCACTTCAGTTGATGTGACTTATCAATGTGCCCAAGCTTCAGAAGTCAAGATGTCACAACTTTGGAAGCACCTTGACATGCAGGGTTTCAGGAAGGTTGATCCAGATCGCTGGGAATTTGCAAACGAGGGTTTTCTAAGAGGTCAAAAACACATGTTAAAGAGTATTAATAGGCGAAAACCCTCTCAGAGTCATCAGCAACAACCTCAAGTGCAGAGTACATCAGTTGGGGCATGTGTTGAGGTTGGGAAATTTGGGCTTGAGGAAGAGGTGGAAAGACTTAAAAGGGATAAGAATGTGCTCATGCAAGAATTGGTTAGGCTGAGGCAGCAACAACAGGCAACTGATCACCAGTTGCAAACCATGGGGCAACGCCTTCAAGGAATGGAGCAGCGGCAACAACAAATGATGTCTTTCCTGGCAAAGGCCATGCAGAGCCCTGGCTTCTTAACGCAACTGGTACAGCAGCAAAATGAGAGCAACAGGTACATAGGTGGAGTTAATAAAAAGAGGAGACTCCCTAAACAGGAAGATAATTCAGAGCCTGGCCATGCTGCCGCTCCTGATGGACAGATCGTTAAGTACCGTCCTCTGATGAATGAGGCGGCAAAAGCAATGCTTAGGCAGATAATGAAGATTGATGGATCTCCCAGGTTTGAACCATGGAACAAGAATCCCTTCCTGATTGATGATGTTCCTTCACCTTCCACTTCATTAGACTGTGGGAGCTCTTCAAATCGGATCTCAGGAGTAACACTTTCAGAGGTTCCACCAATGTCCGGACAGTCATATTTGCCTGTGACCTCAGGTTACCCGGGCATGCATCTCTCAGCTGCCATGTCTGATATTCTATCATCTCCTGATGTAATAACAGACACGGTTACGACAGCTCAATACCCAGACTTGAGTGTGCTAGCTGGAGTGCAAGAGGAGCCTATCACTCCCTTCCGGACAGACATGGTTATGCCTGAGTTCCTTCAAATACAAGGAATGGTTCCGGAAAGCACTGCCGATGTTCCTGTCCCAAATTACATTGGGCTTGGTACAGGAAATGGTGGGTACATGGATCCAATGTCAGTGGGAGTGGATGAGACTATGCCTAGAGAAAGTGATGAGTTCTCACCTGATCCTGATATGAATATCTTACTGGATGGGATCCCTAAGCTTCCGAGCATTAATGATGCCTTCTGGGAGCAGTTCTTTACTGCGAGCCCACTCTCTGGGGACACAAATGAGATTGACTCGAGCACACTGGAAGGCATTAGCAAGGAAATGGATGAGCAGTCAGGGCAGAATGGATGGGACAAGGGTCAGCATATGGATCAGCTTACAAAACAGATGGGGTTTCTTACGTCAGAGACCAAAGGGGGGTGA 1380 47.17 MALTSVDVTYQCAQASEVKMSQLWKHLDMQGFRKVDPDRWEFANEGFLRGQKHMLKSINRRKPSQSHQQQPQVQSTSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDHQLQTMGQRLQGMEQRQQQMMSFLAKAMQSPGFLTQLVQQQNESNRYIGGVNKKRRLPKQEDNSEPGHAAAPDGQIVKYRPLMNEAAKAMLRQIMKIDGSPRFEPWNKNPFLIDDVPSPSTSLDCGSSSNRISGVTLSEVPPMSGQSYLPVTSGYPGMHLSAAMSDILSSPDVITDTVTTAQYPDLSVLAGVQEEPITPFRTDMVMPEFLQIQGMVPESTADVPVPNYIGLGTGNGGYMDPMSVGVDETMPRESDEFSPDPDMNILLDGIPKLPSINDAFWEQFFTASPLSGDTNEIDSSTLEGISKEMDEQSGQNGWDKGQHMDQLTKQMGFLTSETKGG 459
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00116 459 SUPERFAMILY Winged helix DNA-binding domain 19 61 IPR036390 -
Tesi22g00116 459 Coils Coil 86 113 - -
Tesi22g00116 459 MobiDBLite consensus disorder prediction 168 192 - -
Tesi22g00116 459 Gene3D - 11 62 IPR036388 -
Tesi22g00116 459 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 424 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Tesi22g00116 459 SMART hsfneu3 4 61 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00116 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr10:20417041 Tesi22g00116 Tesi-Chr22:11040563 dispersed
Tesi Tesi-Chr21:23540903 Tesi22g00116 Tesi-Chr22:11040563 dispersed
Tesi Tesi-Chr22:11040563 Tesi23g00600 Tesi-Chr23:13145778 dispersed
Tesi Tesi-Chr22:11039012 Tesi22g00116 Tesi-Chr22:11040563 tandem
Tesi Tesi-Chr22:11040563 Tesi22g00117 Tesi-Chr22:11225405 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00256 . 1 299 Heat shock transcription factors Hsfs gene family AT5G62020 46.108 1.59e-91 273.0
Tesi1g00522 . 12 479 Heat shock transcription factors Hsfs gene family AT5G16820 53.15 1.36e-157 455.0
Tesi1g01635 . 1 314 Heat shock transcription factors Hsfs gene family AT5G45710 39.806 1.46e-78 248.0
Tesi2g00245 . 1 347 Heat shock transcription factors Hsfs gene family AT1G46264 52.972 5.35e-110 323.0
Tesi2g01258 . 1 401 Heat shock transcription factors Hsfs gene family AT4G18880 42.424 3.42e-92 283.0
Tesi3g00567 . 1 401 Heat shock transcription factors Hsfs gene family AT4G18880 43.886 5.52e-103 310.0
Tesi3g00734 . 3 218 Heat shock transcription factors Hsfs gene family AT5G62020 35.242 2.29e-39 135.0
Tesi4g00088 . 31 340 Heat shock transcription factors Hsfs gene family AT2G26150 42.442 1.71e-84 258.0
Tesi6g01017 . 7 284 Heat shock transcription factors Hsfs gene family AT4G36990 50.512 5.45e-77 234.0
Tesi7g00772 . 31 277 Heat shock transcription factors Hsfs gene family AT5G03720 48.822 3.34e-90 283.0
Tesi7g01215 . 1 242 Heat shock transcription factors Hsfs gene family AT1G46264 60.331 1.16e-90 270.0
Tesi7g01321 . 33 244 Heat shock transcription factors Hsfs gene family AT2G41690 50.0 5.24e-60 187.0
Tesi9g00674 . 14 200 Heat shock transcription factors Hsfs gene family AT3G24520 65.789 5.57e-89 267.0
Tesi9g00908 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 46.133 3.67e-102 314.0
Tesi10g00284 . 123 314 Heat shock transcription factors Hsfs gene family AT1G67970 36.449 2.60e-30 113.0
Tesi11g01150 . 18 320 Heat shock transcription factors Hsfs gene family AT1G46264 50.495 9.08e-86 258.0
Tesi11g01269 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 56.522 2.18e-70 214.0
Tesi12g00225 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 52.657 9.13e-68 207.0
Tesi13g01036 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 57.488 3.51e-70 213.0
Tesi15g00607 . 14 203 Heat shock transcription factors Hsfs gene family AT3G24520 62.437 9.45e-82 249.0
Tesi15g00853 . 31 326 Heat shock transcription factors Hsfs gene family AT2G26150 47.904 1.56e-101 303.0
Tesi16g00189 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 47.158 1.09e-136 400.0
Tesi16g00600 . 35 402 Heat shock transcription factors Hsfs gene family AT3G22830 54.278 1.88e-127 370.0
Tesi17g00382 . 9 401 Heat shock transcription factors Hsfs gene family AT4G18880 41.28 1.96e-98 299.0
Tesi18g00416 . 17 372 Heat shock transcription factors Hsfs gene family AT1G67970 47.273 9.72e-96 289.0
Tesi20g00545 . 43 402 Heat shock transcription factors Hsfs gene family AT3G22830 53.93 2.63e-128 372.0
Tesi20g00898 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 52.7 1.34e-161 464.0
Tesi21g00426 . 5 299 Heat shock transcription factors Hsfs gene family AT5G62020 44.242 4.48e-85 256.0
Tesi21g00862 . 72 479 Heat shock transcription factors Hsfs gene family AT5G16820 52.135 1.12e-124 370.0
Tesi22g00116 . 55 479 Heat shock transcription factors Hsfs gene family AT5G16820 47.992 2.36e-115 345.0
Tesi22g00117 . 55 459 Heat shock transcription factors Hsfs gene family AT5G16820 48.252 5.83e-95 298.0
Tesi22g00521 . 51 374 Heat shock transcription factors Hsfs gene family AT4G11660 48.765 8.50e-91 273.0
Tesi23g00600 . 17 372 Heat shock transcription factors Hsfs gene family AT1G67970 45.55 8.86e-93 280.0
Tesi24g00636 . 7 284 Heat shock transcription factors Hsfs gene family AT4G36990 51.701 7.22e-84 251.0
Tesi24g00644 . 18 347 Heat shock transcription factors Hsfs gene family AT1G46264 56.18 7.45e-117 340.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Tesi HSF_DNA-bind 0.00016 CL0123 TF HSF