AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Tesi22g00212 | ATGACGACCATGGAGAGCTTGATCGGCCTGGTGAATCGAATCCAGAGGGCCTGTACAGTCCTCGGCGACTATGGTGGCGATAATGCGTTGCCTACTCTCTGGGAAGCTCTCCCTTCCGTTGCAGTCGTTGGAGGACAGAGTTCTGGAAAATCATCGGTTTTGGAGAGCATCGTCGGTCGGGATTTTCTTCCCCGGGGATCCGGGATCGTGACGAGGCGGCCTTTGGTTTTGCAGCTACACAAGACAGACGAGGGACAACAGGAGTATGCAGAGTTTCTTCACTTGCCGAAGAGGAGATTCGCAGATTTCGCTGTGGTTCGCAAAGAAATTCAAGACGAGACTGATAGAATGACAGGGAGGTCAAAACAGATTTCCCCGATTCCTATTCATCTCAGTATCTACTCCCCAAATGTTGTCAACTTAACTTTGATAGATTTACCTGGTTTAACAAAGGTTGCTGTAGAGGGACAGCCGGATAGTATCGTTCAAGACATTGAAAACATGGTTCGCTCTTATGTTGAGAAGCCTAATTGCATCATACTAGCAATATCTCCAGCCAATCAAGATATAGCGACCTCTGATGCTATCAAACTCGCTAGAGAAGTTGATCCGACAGGTGAAAGGACATTTGGGGTGTTGACAAAGCTAGATTTGATGGATAAGGGAACAAACGCACTGGATGTTCTTGAAGGAAGATCTTATCGGCTGCAACATCCTTGGGTTGGCATTGTGAACCGTTCACAAGCTGATATCAATAAAAATGTCGACATGATTGCTGCTCGGCGTCGGGAGCGCGACTACTTTGCAACTAGTTCTGACTATTCTCACTTATCTAGTAAAATGGGTTCAGAATATCTTGCAAAACTTCTCTCAAGGCACTTGGAATCTGTAATTAGGGCTCGCATACCAAGTATCACTTCCTTGATAAACAAAAGCATTGATGAACTTGAAGCGGAGATGGATCACCTTGGTAGGCCTATTGCTGTTGATGCAGGGGCTCAATTGTACACTATCCTAGAACTTTGCCGTGCATTTGACCGGATATTCAAGGAACATCTGGATGGAGGGCGACCTGGTGGAGATAGGATATATGGGGTTTTTGACAACCAGCTCCCTGCTGCTTTGAAAAAGCTTCCATTTGATCGGCATCTTTCTCTGCAGAATGTAAGGAAAGTGGTTTCAGAGGCAGATGGTTATCAACCCCATCTGATTGCACCTGAGCAAGGGTACCGGCGCCTCATTGATGGAGCCCTAAACTATTTCAGAGGCCCAGCTGAAGCATCAGTAGATGCTGTCCACTTTGTCTTGAAAGAACTTGTGAGGAAGTCTATTGGAGAAACTCAGGAGTTAAAGCGCTTTCCAACTCTTCAAGCTGAACTAGCGGCTGCTTGCAACGAAGCCTTGGAAAGGTTCCGTGATGATGGTAAGAAGACAACCCTGCGATTGGTGGACATGGAATCTTCATACCTGACTGTAGAGTTCTTTCGAAGACTCCCCCAGGAAGTGGAGAAGGGAGGAAATCCAGCTGCCTCCACCGTTGACCGTTACACAGAGGGGCACTTCAGGAGGATAGGGTCAAATGTCTCTTCTTATGTGGGTATGGTGTCTGAGACACTCAAGTACTCCATCCCAAAAGCAGTTGTCCATTGTCAAGTTAAGGAGGCCAAGCGGTCATTACTTGATCACTTCTATACACAAGTGGGGAAGAAGGAGGGTAAGCAGCTTTCACAAATGTTGGATGAAGACCCAGCATTGATGGAGAGGAGGCAACAATGTGCAAAAAGGCTTGAATTGTACAAGTCAGCAAGGGATGAGATTGATTCTGTGTCATGGGCCAGATGA | 1842 | 46.74 | MTTMESLIGLVNRIQRACTVLGDYGGDNALPTLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHKTDEGQQEYAEFLHLPKRRFADFAVVRKEIQDETDRMTGRSKQISPIPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQPDSIVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARRRERDYFATSSDYSHLSSKMGSEYLAKLLSRHLESVIRARIPSITSLINKSIDELEAEMDHLGRPIAVDAGAQLYTILELCRAFDRIFKEHLDGGRPGGDRIYGVFDNQLPAALKKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDGALNYFRGPAEASVDAVHFVLKELVRKSIGETQELKRFPTLQAELAAACNEALERFRDDGKKTTLRLVDMESSYLTVEFFRRLPQEVEKGGNPAASTVDRYTEGHFRRIGSNVSSYVGMVSETLKYSIPKAVVHCQVKEAKRSLLDHFYTQVGKKEGKQLSQMLDEDPALMERRQQCAKRLELYKSARDEIDSVSWAR | 613 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Tesi22g00212 | 613 | Pfam | Dynamin family | 40 | 216 | IPR045063 | - | |
| Tesi22g00212 | 613 | Pfam | Dynamin GTPase effector domain | 518 | 609 | IPR003130 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tesi22g00212 | 613 | PANTHER | DYNAMIN | 5 | 609 | IPR022812 | GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER) | |
| Tesi22g00212 | 613 | FunFam | dynamin-related protein 1E | 4 | 312 | - | - | |
| Tesi22g00212 | 613 | Gene3D | Dynamin, middle domain | 329 | 579 | - | - | |
| Tesi22g00212 | 613 | ProSiteProfiles | Dynamin-type guanine nucleotide-binding (G) domain profile. | 34 | 303 | IPR030381 | GO:0005525(InterPro) | |
| Tesi22g00212 | 613 | PRINTS | Dynamin signature | 227 | 246 | IPR022812 | - | |
| Tesi22g00212 | 613 | PRINTS | Dynamin signature | 185 | 203 | IPR022812 | - | |
| Tesi22g00212 | 613 | PRINTS | Dynamin signature | 204 | 220 | IPR022812 | - | |
| Tesi22g00212 | 613 | PRINTS | Dynamin signature | 135 | 152 | IPR022812 | - | |
| Tesi22g00212 | 613 | PRINTS | Dynamin signature | 37 | 55 | IPR022812 | - | |
| Tesi22g00212 | 613 | PRINTS | Dynamin signature | 62 | 79 | IPR022812 | - | |
| Tesi22g00212 | 613 | ProSitePatterns | Dynamin-type guanine nucleotide-binding (G) domain signature. | 63 | 72 | IPR019762 | - | |
| Tesi22g00212 | 613 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 4 | 311 | IPR027417 | - | |
| Tesi22g00212 | 613 | SMART | GED-2 | 516 | 609 | IPR003130 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tesi22g00212 | 613 | FunFam | Dynamin-related protein 1C | 334 | 589 | - | - | |
| Tesi22g00212 | 613 | SMART | dynamin-3 | 4 | 254 | IPR001401 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tesi22g00212 | 613 | ProSiteProfiles | GED domain profile. | 521 | 613 | IPR020850 | - | |
| Tesi22g00212 | 613 | CDD | DLP-1 | 37 | 303 | IPR001401 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Tesi22g00212 | 613 | Gene3D | - | 4 | 312 | IPR027417 | - | |
| Tesi22g00212 | 613 | Pfam | Dynamin central region | 224 | 491 | IPR000375 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Tesi22g00212 | K27686 | phragmoplastin DRP1 [EC:3.6.5.-] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Tesi | Tesi-Chr1:30137046 | Tesi22g00212 | Tesi-Chr22:18364627 | dispersed | |
| Tesi | Tesi-Chr21:3256534 | Tesi22g00212 | Tesi-Chr22:18364627 | dispersed | |
| Tesi | Tesi-Chr22:18364627 | Tesi22g00779 | Tesi-Chr22:31185888 | dispersed | |
| Tesi | Tesi-Chr4:36755487 | Tesi22g00212 | Tesi-Chr22:18364627 | transposed | |
| Tesi | Tesi-Chr1:17139260 | Tesi22g00212 | Tesi-Chr22:18364627 | wgd | |
| Tesi | Tesi-Chr1:9713343 | Tesi22g00212 | Tesi-Chr22:18364627 | wgd |