AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00230 ATGGATTCATCCTCTGTTCTTGGCGCTGCAAGAAGGCCTAGTATTATTGAAGACGACGATGATGTAGCTTCTCTCTCGGACATGGAAGCTGGGTTCTCGGGAAACCACCTTCTTCTTTCCAAATCTTCTTGTTATGATCCTTCTAGGAGAAGGGGTAGTTACAGATTCCTCTCTCGTTCTTCTTCATCTTCTTCTCCGAGGTTATATGACGCTAGGTGCGAAGAACACCACCATCCCCATTTTCTGAAAGCCTGTTTTCTCTGCAAGAAATCACTTGGAGATAACAGAGACATCTTCATGTATAGAGGAGATACTCCATTCTGTAGCGAGGAGTGCAGACAAGAACAGATAGAGATAGATGAAGCAAAAGAGAAGAACTGGAAGCTCTCTTCTTCCATGAAGACCTTGAGAAAAGAACAGAATAAATCACCCAAGAACTACCAAGTTCGAACGAGCACCGTTGCAGCTGCTTAA 474 43.88 MDSSSVLGAARRPSIIEDDDDVASLSDMEAGFSGNHLLLSKSSCYDPSRRRGSYRFLSRSSSSSSPRLYDARCEEHHHPHFLKACFLCKKSLGDNRDIFMYRGDTPFCSEECRQEQIEIDEAKEKNWKLSSSMKTLRKEQNKSPKNYQVRTSTVAAA 157
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00230 157 MobiDBLite consensus disorder prediction 135 157 - -
Tesi22g00230 157 PANTHER FCS-LIKE ZINC FINGER 1-RELATED 58 156 IPR044533 -
Tesi22g00230 157 Pfam zinc-finger of the FCS-type, C2-C2 74 123 IPR007650 -
Tesi22g00230 157 ProSiteProfiles Zinc finger FLZ-type profile. 80 124 IPR007650 -
Tesi22g00230 157 Coils Coil 119 139 - -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00230 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:19178265 Tesi5g00358 Tesi-Chr5:31910341 dispersed
Tesi Tesi-Chr1:17418188 Tesi22g00230 Tesi-Chr22:19178265 wgd