AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00239 ATGTATAGAGATCGAGGCGGAGTCGGATCGAAATCGGAGATCGGTCCTCTCGATCGTAAGCGGATCAATGATGCTTTAGATAAACACCTGGAGAAGTCGTCGCCGTCGACGTCGAAGGGATTGAACGGCAAGGAAAAGGGCAGATTATCCGTTCCGTCCACTTCCGCCGGCAAGCCACCACCTGATCACAGGGACACTCGTTCAGCTTCTCTCTCCAAGAATAAATGCTCTGACGAGGAGTCTGAAACAGACAGTGAAGAGTCAGATGTTAGTGGTTCTGATGGGGATGACACATCTTGGATCTCATGGTTTTGCAATCTGCGAGGGAATGAATTCTTCTGTGAAGTTGATGATGAGTACATCCAAGATGATTTTAACCTCTGCGGGTTAAGCAGTCAAGTTCCTTACTATGATTATGCACTTGATTTGATTTTGGATGTTGAATCCTCTCACGGTGATATGTTCACTGAGGAACAGAATGAATTGGTCGAATCGGCAGCAGAGATGCTGTATGGTCTGATTCATGTCCGATACATACTAACTAGCAAAGGAATGTCCGCAATGTTAGACAAGTACAAGAACTACGACTTTGGGAGATGCCCAAGAGTTTACTGCTGTGGACAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCTCGGTCGAACATTGATGGAGCTTATTTTGGAACCACGTTTCCTCACCTGTTTCTGATGACTTATGGGCATCTCAAACCACAAAAGGCGTCACAGAGCTATGTTCCAAGAATATTTGGCTTCAAGATCCACAAGCCATGA 795 46.04 MYRDRGGVGSKSEIGPLDRKRINDALDKHLEKSSPSTSKGLNGKEKGRLSVPSTSAGKPPPDHRDTRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMSAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSNIDGAYFGTTFPHLFLMTYGHLKPQKASQSYVPRIFGFKIHKP 264
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00239 264 Pfam Casein kinase II regulatory subunit 221 260 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 Pfam Casein kinase II regulatory subunit 99 220 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 MobiDBLite consensus disorder prediction 1 95 - -
Tesi22g00239 264 SUPERFAMILY Casein kinase II beta subunit 97 263 IPR035991 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 FunFam Casein kinase II subunit beta 92 196 - -
Tesi22g00239 264 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 92 196 IPR016149 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 Gene3D - 197 221 - -
Tesi22g00239 264 PANTHER CASEIN KINASE II SUBUNIT BETA 221 263 IPR000704 GO:0005737(PANTHER)|GO:0005956(InterPro)|GO:0005956(PANTHER)|GO:0019887(InterPro)|GO:0019887(PANTHER)
Tesi22g00239 264 PRINTS Casein kinase II regulatory subunit family signature 116 130 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 PRINTS Casein kinase II regulatory subunit family signature 171 192 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 PRINTS Casein kinase II regulatory subunit family signature 99 115 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 PRINTS Casein kinase II regulatory subunit family signature 196 217 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 SMART CK-II-beta-2 99 260 IPR000704 GO:0005956(InterPro)|GO:0019887(InterPro)
Tesi22g00239 264 Gene3D - 222 251 - -
Tesi22g00239 264 MobiDBLite consensus disorder prediction 60 80 - -
Tesi22g00239 264 MobiDBLite consensus disorder prediction 14 34 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00239 K03115 casein kinase II subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr18:38038689 Tesi22g00239 Tesi-Chr22:19544013 transposed
Tesi Tesi-Chr21:16688491 Tesi22g00239 Tesi-Chr22:19544013 transposed
Tesi Tesi-Chr23:2373644 Tesi22g00239 Tesi-Chr22:19544013 transposed
Tesi Tesi-Chr1:17546232 Tesi22g00239 Tesi-Chr22:19544013 wgd
Tesi Tesi-Chr21:16658027 Tesi22g00239 Tesi-Chr22:19544013 wgd