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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00254 ATGGCAACCCTTCGAAATCTGAAAATCAAAACCGGTACCTGCAAACGTATCCTTAAAGAGCTACGTTCCTATGAGAAAGAGGTTGAGAGAGAAGCTGCAAAGACTGCTGACATGAAGGAGAAAGGAGCTGACCCTTATGACCTTAAGCAGCAGGAGAATGTGTTGGCTGAATCTAGAATGATGATTCCTGATTGCCACAAGCGTCTGGAGGCCTCACTAACCGACCTAAAAGGAACTTTGGTGGAGTTAGAGGAGTCAAATCTGAAAGAAGGACCGGAAATTGATGAAGCTCGAAGCATAATTGCTGAGGTTGAACCTTTGTTTCAAACAGGGGAAGCATAG 342 44.74 MATLRNLKIKTGTCKRILKELRSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMIPDCHKRLEASLTDLKGTLVELEESNLKEGPEIDEARSIIAEVEPLFQTGEA 113
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00254 113 Coils Coil 66 86 - -
Tesi22g00254 113 FunFam Tubulin-specific chaperone A 1 109 - -
Tesi22g00254 113 SUPERFAMILY Tubulin chaperone cofactor A 3 104 IPR036126 GO:0007021(InterPro)|GO:0007023(InterPro)|GO:0048487(InterPro)
Tesi22g00254 113 Coils Coil 14 41 - -
Tesi22g00254 113 Gene3D - 1 113 - -
Tesi22g00254 113 PANTHER TUBULIN-SPECIFIC CHAPERONE A 1 107 IPR004226 GO:0005829(PANTHER)|GO:0006457(PANTHER)|GO:0007021(InterPro)|GO:0007021(PANTHER)|GO:0007023(InterPro)|GO:0015630(PANTHER)|GO:0015631(PANTHER)|GO:0048487(InterPro)
Tesi22g00254 113 Pfam Tubulin binding cofactor A 3 101 IPR004226 GO:0007021(InterPro)|GO:0007023(InterPro)|GO:0048487(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00254 K17292 tubulin-specific chaperone A
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr1:17788831 Tesi22g00254 Tesi-Chr22:20166095 dispersed