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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tesi22g00283 ATGCATAGGATGAGAGTGTCTTCATTTTTAAGAGTGGGATCCAAAACACTGGACTTGAGGGAGCAATTATTCAGGCCACCGTCGCTCCGATCATATCTTGCCGAGTTTCTCTCTACCTTCATCTTCGTTTTCGCCGGAGTAGGTTCTGCAATCTCTGCCGGTAAGTTGGCTACATCAGATGCTCAATCAGCTGAAACCGGGCTAGTGGCGGTTGCCTTGGCCAATGCCTTCGCATTGTTCGTGGCAATCTACGTGGCAGAAAATGTCTCCGGTGGCCACATAAACCCGGCCGTCACCTTCGGATTGGTCGTTGGAGGGCATGTCAGCATTTTAACTGGCATTTGTTACTGGGCCGCTCAGTTGTTAGGATCCACCATGGCATGTCTCCTCTTGATGTTGGTCACAGCAGGGCAGGCTATCCCTACACACAAGTTGGCTGAGGAGATGACCGGATTTGGTGGCACGGTGATGGAGAGCGTTTTGGCGTTTGCCCATGTGTACACCGTGTATGCTACGAGGGACCCGAAGAATGGAATACATGGAGTGATTGGACCCATAGCAATTGGGTTTATATTTGGGTCGAACGTCCTTGCAGCCGGTCCTTTCACAGGTGGGTCCATGAACCCGGCCCGATCGTTTGGGCCCGCCATAATCACCGGTGATTTTAAGAACCATGGGGTCTACTGGGTGGGCCCGCTTTTGGGTGGAGGCATTGCTGGCCTAGTTTATGAACACGCCATATCACTCGCCAATAACCAACCTTCCTCTGTTACAAATACAGCGTAG 786 51.65 MHRMRVSSFLRVGSKTLDLREQLFRPPSLRSYLAEFLSTFIFVFAGVGSAISAGKLATSDAQSAETGLVAVALANAFALFVAIYVAENVSGGHINPAVTFGLVVGGHVSILTGICYWAAQLLGSTMACLLLMLVTAGQAIPTHKLAEEMTGFGGTVMESVLAFAHVYTVYATRDPKNGIHGVIGPIAIGFIFGSNVLAAGPFTGGSMNPARSFGPAIITGDFKNHGVYWVGPLLGGGIAGLVYEHAISLANNQPSSVTNTA 261
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tesi22g00283 261 ProSitePatterns MIP family signature. 93 101 IPR022357 -
Tesi22g00283 261 PANTHER AQUAPORIN-8 22 247 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Tesi22g00283 261 FunFam Probable aquaporin TIP5-1 15 255 - -
Tesi22g00283 261 CDD MIP 30 245 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 Pfam Major intrinsic protein 26 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 SUPERFAMILY Aquaporin-like 22 252 IPR023271 -
Tesi22g00283 261 Gene3D Glycerol uptake facilitator protein. 14 257 IPR023271 -
Tesi22g00283 261 PRINTS Major intrinsic protein family signature 75 99 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 PRINTS Major intrinsic protein family signature 30 49 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 PRINTS Major intrinsic protein family signature 112 131 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Tesi22g00283 261 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tesi22g00283 K09873 aquaporin TIP
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Tesi Tesi-Chr22:20855122 Tesi9g00745 Tesi-Chr9:39330431 dispersed
Tesi Tesi-Chr22:20855122 Tesi22g00284 Tesi-Chr22:20877488 tandem
Tesi Tesi-Chr21:13572194 Tesi22g00283 Tesi-Chr22:20855122 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Tesi1g00205 . 1 286 Major Intrinsic Protein gene family AT2G45960 89.161 0.0 533.0
Tesi1g01620 . 1 293 Major Intrinsic Protein gene family AT4G18910 65.449 2.29e-136 385.0
Tesi2g00630 . 82 259 Major Intrinsic Protein gene family AT2G16850 35.385 4.79e-25 97.8
Tesi2g01834 . 278 343 Major Intrinsic Protein gene family AT1G31880 53.03 1.58e-18 86.7
Tesi3g00418 . 29 304 Major Intrinsic Protein gene family AT4G10380 83.696 2.36e-168 467.0
Tesi3g00573 . 1 293 Major Intrinsic Protein gene family AT4G18910 62.583 1.08e-122 360.0
Tesi4g00443 . 241 305 Major Intrinsic Protein gene family AT1G80760 60.87 2.49e-16 69.7
Tesi4g00444 . 2 305 Major Intrinsic Protein gene family AT1G80760 77.597 6.45e-165 459.0
Tesi4g00449 . 2 305 Major Intrinsic Protein gene family AT1G80760 77.597 2.57e-165 461.0
Tesi4g00882 . 105 277 Major Intrinsic Protein gene family AT5G37820 61.236 3.12e-66 205.0
Tesi4g00883 . 1 277 Major Intrinsic Protein gene family AT5G37820 63.028 2.34e-122 349.0
Tesi5g01000 . 1 280 Major Intrinsic Protein gene family AT4G35100 87.857 0.0 498.0
Tesi6g00599 . 55 264 Major Intrinsic Protein gene family AT4G19030 41.905 3.76e-46 152.0
Tesi6g01433 . 1 247 Major Intrinsic Protein gene family AT4G35100 88.664 5.41e-161 448.0
Tesi7g00241 . 76 262 Major Intrinsic Protein gene family AT4G00430 88.77 5.47e-121 347.0
Tesi7g00394 . 1 252 Major Intrinsic Protein gene family AT4G01470 81.746 1.92e-149 415.0
Tesi7g00695 . 1 251 Major Intrinsic Protein gene family AT2G36830 81.275 8.33e-150 416.0
Tesi7g01169 . 288 343 Major Intrinsic Protein gene family AT1G31880 57.143 1.62e-15 78.2
Tesi8g00645 . 192 239 Major Intrinsic Protein gene family AT5G18290 64.583 8.78e-17 75.9
Tesi8g00646 . 2 187 Major Intrinsic Protein gene family AT3G04090 56.085 1.04e-54 173.0
Tesi9g00741 . 1 247 Major Intrinsic Protein gene family AT2G25810 79.435 2.25e-131 372.0
Tesi9g00745 . 1 250 Major Intrinsic Protein gene family AT3G16240 84.8 2.96e-148 412.0
Tesi9g00947 . 1 344 Major Intrinsic Protein gene family AT1G31880 45.098 4.29e-95 286.0
Tesi10g00193 . 266 343 Major Intrinsic Protein gene family AT1G31880 44.048 1.38e-13 71.6
Tesi10g00194 . 266 343 Major Intrinsic Protein gene family AT1G31880 44.048 5.95e-14 72.8
Tesi10g00379 . 43 276 Major Intrinsic Protein gene family AT5G37810 74.359 4.04e-125 355.0
Tesi11g00244 . 1 286 Major Intrinsic Protein gene family AT4G00430 89.86 0.0 534.0
Tesi11g00467 . 1 239 Major Intrinsic Protein gene family AT4G01470 83.264 3.43e-141 398.0
Tesi11g00611 . 1 283 Major Intrinsic Protein gene family AT3G54820 84.859 2.46e-179 493.0
Tesi11g01099 . 1 237 Major Intrinsic Protein gene family AT3G56950 55.212 2.86e-99 288.0
Tesi11g01103 . 1 237 Major Intrinsic Protein gene family AT3G56950 60.338 1.56e-104 300.0
Tesi12g00291 . 29 213 Major Intrinsic Protein gene family AT1G31880 33.508 3.37e-16 79.3
Tesi12g00622 . 1 248 Major Intrinsic Protein gene family AT5G60660 81.855 1.99e-151 423.0
Tesi13g00214 . 1 285 Major Intrinsic Protein gene family AT3G54820 80.07 3.49e-170 476.0
Tesi13g00506 . 1 251 Major Intrinsic Protein gene family AT2G36830 82.072 1.74e-148 412.0
Tesi13g00901 . 140 202 Major Intrinsic Protein gene family AT1G31880 49.206 1.01e-15 71.6
Tesi14g00607 . 1 239 Major Intrinsic Protein gene family AT5G18290 47.778 9.19e-71 216.0
Tesi14g00736 . 11 262 Major Intrinsic Protein gene family AT3G06100 55.159 6.38e-99 290.0
Tesi15g00303 . 1 305 Major Intrinsic Protein gene family AT1G80760 72.964 5.07e-154 436.0
Tesi15g00806 . 1 318 Major Intrinsic Protein gene family AT1G31880 45.326 2.97e-83 254.0
Tesi18g00675 . 13 289 Major Intrinsic Protein gene family AT4G18910 41.135 6.19e-74 227.0
Tesi19g00103 . 172 344 Major Intrinsic Protein gene family AT1G31880 49.029 5.11e-52 169.0
Tesi19g00104 . 1 168 Major Intrinsic Protein gene family AT1G31880 40.449 2.13e-30 111.0
Tesi20g00156 . 11 255 Major Intrinsic Protein gene family AT3G54820 28.794 1.57e-26 104.0
Tesi21g00350 . 60 285 Major Intrinsic Protein gene family AT4G00430 83.539 3.29e-145 406.0
Tesi21g00351 . 1 255 Major Intrinsic Protein gene family AT2G45960 89.412 7.36e-172 477.0
Tesi21g00648 . 4 256 Major Intrinsic Protein gene family AT3G47440 62.353 2.75e-110 316.0
Tesi21g00916 . 1 344 Major Intrinsic Protein gene family AT1G31880 63.014 1.15e-152 431.0
Tesi22g00283 . 10 232 Major Intrinsic Protein gene family AT3G16240 62.5 2.85e-94 276.0
Tesi22g00284 . 1 250 Major Intrinsic Protein gene family AT3G16240 78.0 1.47e-137 385.0
Tesi22g00605 . 1 286 Major Intrinsic Protein gene family AT2G45960 78.086 0.0 504.0
Tesi23g00446 . 140 207 Major Intrinsic Protein gene family AT1G31880 45.588 8.64e-15 75.5
Tesi24g00245 . 280 343 Major Intrinsic Protein gene family AT1G31880 56.25 4.32e-18 85.5
Tesi24g00270 . 264 343 Major Intrinsic Protein gene family AT1G31880 30.973 1.86e-08 56.2
Tesi24g00403 . 44 267 Major Intrinsic Protein gene family AT5G37820 47.755 2.40e-67 208.0
Tesi24g00404 . 184 275 Major Intrinsic Protein gene family AT5G37820 46.875 4.01e-22 87.4
Tesi24g00884 . 1 280 Major Intrinsic Protein gene family AT4G35100 88.929 0.0 517.0